| Microspectroscopic imaging of nodulation factor-binding sites on living Vicia sativa roots using a novel bioactive fluorescent nodulation factor Biophysical Journal, Volume 72, Issue 5, 1 May 1997, Pages 1986-1996 T.W. Gadella, G. Vereb, A.E. Hadri, H. Röhrig, J. Schmidt, M. John, J. Schell and T. Bisseling Abstract A novel bioactive fluorescent nodulation (Nod) factor, NodRlv-IV(BODIPY FL-C16), has been synthesized by attaching a BODIPY FL-C16 acyl chain to the primary amino group of chitotetraose deacetylated at the nonreducing terminus by recombinant NodB. The binding of the fluorescent Nod factor to root systems of Vicia sativa was investigated with fluorescence spectral imaging microscopy (FSPIM) and fluorescence ratio imaging microscopy (FRIM). Spatially resolved fluorescence spectra of living and labeled Vicia sativa root systems were measured by FSPIM. Strong autofluorescence, inherent to many plant systems when excited at 488 nm, was corrected for by utilizing the difference in fluorescence emission spectra of the autofluorescence and NodRlv-IV(BODIPY FL-C16). A methodology is presented to break down the in situ fluorescence emission spectra into spatially resolved autofluorescence and BODIPY FL fluorescence spectra. Furthermore, an FRIM method was developed for correcting autofluorescence in fluorescence micrographs for this system. After autofluorescence correction it was shown that NodRlv-IV(BODIPY FL-C16) was concentrated in the root hairs, but was also bound to other parts of the root surface. Abstract | PDF (2327 kb) |
| Blind Spectral Decomposition of Single-Cell Fluorescence by Parallel Factor Analysis Biophysical Journal, Volume 86, Issue 3, 1 March 2004, Pages 1739-1752 Hideki Shirakawa and Shunichi Miyazaki Abstract Simultaneous measurement of multiple signaling molecules is essential to investigate their relations and interactions in living cells. Although a wide variety of fluorescent probes are currently available, the number of probes that can be applied simultaneously is often limited by the overlaps among their fluorescence spectra. We developed the experimental system to measure and analyze many overlapping fluorescent components in single cells. It is based on the recording of two-dimensional single-cell fluorescence spectra and on the blind spectral decomposition of fluorescence data by method of parallel factor analysis. Because this method does not require any preknowledge about the shapes of individual component spectra, it can be applied to the specimens that contain fluorescent components with unknown spectra. By examining the performance using the mixture solutions of fluorescent indicators, it was confirmed that >10 largely overlapping spectral components could be easily separated. The effectiveness in the physiological experiments was proven in the applications to the temporal analysis of intracellular Ca concentration and pH, as well as the intrinsic fluorescent components, in single mouse oocytes. Abstract | Full Text | PDF (1178 kb) |
| Spatial Patterning of Metabolism by Mitochondria, Oxygen, and Energy Sinks in a Model Cytoplasm Current Biology, Volume 18, Issue 8, 22 April 2008, Pages 586-591 Philipp Niethammer, Hao Yuan Kueh and Timothy J. Mitchison Summary Metabolite gradients might guide mitochondrial localization in cells and angiogenesis in tissues . It is unclear whether they can exist in single cells, because the length scale of most cells is small compared to the expected diffusion times of metabolites. For investigation of metabolic gradients, we need experimental systems in which spatial patterns of metabolism can be systematically measured and manipulated. We used concentrated cytoplasmic extracts from eggs as a model cytoplasm, and visualized metabolic gradients formed in response to spatial stimuli. Restriction of oxygen supply to the edge of a drop mimicked distance to the surface of a single cell, or distance from a blood vessel in tissue. We imaged a step-like increase of Nicotinamide adenine dinucleotide (NAD) reduction ∼600 μm distant from the oxygen source. This oxic-anoxic switch was preceded on the oxic side by a gradual rise of mitochondrial transmembrane potential (Δψ) and reactive oxygen species (ROS) production, extending over ∼600 μm and ∼300 μm, respectively. Addition of Adenosine triphosphate (ATP)-consuming beads mimicked local energy sinks in the cell. We imaged Δψ gradients with a decay length of ∼50–300 μm around these beads, in the first visualization of an energy demand signaling gradient. Our study demonstrates that mitochondria can pattern the cytoplasm over length scales that are suited to convey morphogenetic information in large cells and tissues and provides a versatile model system for probing of the formation and function of metabolic gradients. Summary | Full Text | PDF (1435 kb) |
Copyright © 2005 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 89, Issue 6, L55-L57, 1 December 2005
doi:10.1529/biophysj.105.073866
Biophysical Letters
D. Chorvat*,
,
, J. Kirchnerova†, *, M. Cagalinec†, *, J. Smolka*, A. Mateasik* and A. Chorvatova‡
* Department of Biophotonics, International Laser Centre, Ilkovicova 3, 81219 Bratislava, Slovakia, Canada
† Faculty of Mathematics, Physics and Informatics, Comenius University, Mlynska dolina, 84248 Bratislava, Slovakia, Canada
‡ Research Centre of Sainte-Justine Hospital & Department of Pediatrics, University of Montreal, H3T1C5 Montreal, Canada
Address reprint requests and inquiries to Dr. D. Chorvat, Tel.: 4212-6542-1575.Numerous cardiac diseases, including hypertension and diabetes, are associated with mitochondrial dysfunction. It is therefore highly relevant to develop appropriate tools for investigation of metabolic changes directly in living cells, such as redox fluorimetry and imaging based on the intrinsic cellular fluorophores. The main sources of cell autofluorescence, when excited by visible light, are oxidized mitochondrial flavins and flavoproteins 1,2,3,4. However, several naturally occurring fluorophores based on the FAD cofactor have emission spectra that are superimposed in a broad band in the wavelength region of 490–560nm, making their separation particularly difficult. In our previous contribution we demonstrated the sensitivity of cardiomyocyte autofluorescence spectra to changes in the redox state 5. In this study, we aim to separate the individual spectral components of the flavin autofluorescence. The enzymes fluorescing in the cells can be hardly isolated in their native state; we therefore attempted to resolve individual components of flavin autofluorescence directly in cardiac cells using their responsiveness to modulators of cell metabolism and respiration and apply spectral decomposition techniques for their separation.
See Supplementary Material for Material and Methods.
Despite large number of enzymes containing flavin cofactors, previous research has established that α-lipoamide dehydrogenase (LipDH) and electron transferring flavoprotein (ETF) of the mitochondrial respiratory chain are the most significant contributors to bound flavin cellular autofluorescence. The fact that the LipDH is in redox equilibrium with NADH and the ETF is redoxly associated with ubiquinone (UQ) allows one to selectively monitor their redox state 6 and to use the inhibition of mitochondrial respiratory chain for their selective reductions. In the first instance, we therefore attempted to isolate the LipDH and the ETF by sequential application of rotenone and cyanide in cells placed at low redox potential in 2mM glucose (FIGURE 1ii) 3,6. The control emission spectra (FIGURE 1i) of cardiac cells were obtained from the multispectral images (Fig. 1, inset) by plotting the mean intensity values within the whole cell area as a function of emission wavelength.
To modulate the fluorescence of LipDH, we applied rotenone, an irreversible inhibitor of NADH dehydrogenase. This treatment raised mitochondrial NADH by blocking the electron transport chain at complex I 3 and prevented the NADH-linked flavin of LipDH from being oxidized 4. The change of the redox state of the LipDH pool toward its reduced form was observed as a small drop in the fluorescence emission in blue-green region (FIGURE 1iii).
Second, we applied sodium cyanide, well-known blocker of electron transport at the level of the complex IV of the respiratory chain 3,6. The addition of the cyanide to cells pretreated with rotenone allowed us to discriminate between flavoproteins tight to the respiratory chain below the complex I from the flavoproteins that are reduced via ubiquinone above the complex I. As expected, this treatment resulted in a sharp drop in the autofluorescence emission intensity, predominantly in the shorter-wavelengths range (FIGURE 1iv). This is typical for the blue-shifted autofluorescence of FAD bound in electron transfer protein 1 of the mitochondrial β-oxidation pathway for which redox changes are ubiquinone dependent 6. Although the reduction of ubiquinone pool should lead to reduction of various flavoproteins (besides ETF), such as electron transferring protein ubiquinone reductase ETF:UQ and succinate dehydrogenase, their contribution to overall flavoprotein fluorescence can be neglected, as demonstrated previously 7.
After the treatment with both rotenone and cyanide, a significant amount of cell fluorescence remained in yellow spectral region with the emission maximum at 550–560nm (FIGURE 1iv). This remaining component was suggested to be linked to enzymes of fatty acid β-oxidation 7. Indeed, the octanoate (5mM), when applied to cells in the presence of the rotenone, significantly enhanced the fluorescence in this spectral region (FIGURE 3v). We hypothesize that dehydrogenation of octanoylCoA derivates, catalyzed by acylCoA dehydrogenase reaching its maximum activity in the presence of octanoate 8, could be responsible for the origin of this signal.
We finally attempted to increase the fluorescence intensity of free oxidized FAD/FMN in cardiomyocytes by addition of 2,4-dinitrophenol (DNP), the uncoupler of mitochondrial oxidation, which is known to increase oxidized state of mitochondria, leading to generation of oxidized flavins 4. We observed significant elevation of overall fluorescence 5–10min after perfusion of cells with DNP in control external solution, especially in the green spectral region with maximum at 530nm (FIGURE 1vi), which closely resembles the emission reported for free oxidized FAD.
To identify major spectral components in autofluorescence images of isolated cardiomyocytes, we have applied principal component analysis 9. First step was to define the number of significant, independent sources of the component variation, which could regenerate matrix of experimental data. By single value decomposition technique 9 we have estimated that three significant components were present in our data. The spectra of these components were determined using the target transformation method described by Beauchemin 10. As an initial estimation of the potential target spectra we have used the difference spectra obtained after the specific modulation of autofluorescence, constructed from profiles described at Fig. 1. The final spectral profiles (Fig. 2) were computed using constrained least-square optimization.
In the next step, we applied the linear unmixing approach to separate the individual components in the recorded images. We fitted the measured emission signal at each image pixel with the function S(λ)sum, computed according to the equation
![]() | (1) |
Unmixed images (FIGURE 3A) revealed the predominance of the blue-fluorescent first component with the spectral maximum around 500nm in control conditions. This component was almost completely abolished using cyanide in the presence of rotenone (FIGURE 3B1), suggesting that it mainly images the flavin bound to the ETF. Contribution of the LipDH could not be resolved in this case due to its overlap with the ETF component; other approaches such as the use of multiple excitation wavelengths 3 may be needed in addition to spectral imaging for further separation of these components. On the other hand, the DNP clearly enhanced the second component peaking at 530nm (FIGURE 3B2), in agreement with its free FAD origin. Finally, the third component with the maximum around 560nm was significantly enhanced using octanoate (FIGURE 3B3), supporting its acylCoA dehydrogenase origin. The residual signal with maximum at 615nm (not shown) was small and mostly compartmentalized; porphyrin-filled lipofuscin deposits are most likely to be responsible for its origin.
Our results indicate that the different components of cardiomyocyte flavin autofluorescence can be identified and separated using spectrally resolved confocal microscopy and enzyme-selective modulation of the mitochondrial metabolic state, followed by linear unmixing. This approach can greatly improve the analysis of the flavin autofluorescence and its use for diagnostics of cardiomyocyte mitochondrial dysfunction.
This work was supported by Collaborative Linkage grant LST.CLG.979836 from the North Atlantic Treaty Organization. A.C. is a Fonds de la Recherche en Santé du Québec (2948) fellow supported by the Canadian Institutes of Health Research (MOP 74600).
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