| Microbial degradation of sulfur, nitrogen and oxygen heterocycles Trends in Microbiology, Volume 14, Issue 9, 1 September 2006, Pages 398-405 Ping Xu, Bo Yu, Fu Li Li, Xiao Feng Cai and Cui Qing Ma Abstract Sulfur (S), nitrogen (N) and oxygen (O) heterocycles are among the most potent environmental pollutants. Microbial degradation of these pollutants is attracting more and more attention because such bioprocesses are environmentally friendly. The biotechnological potential of these processes is being investigated, for example, to achieve better sulfur removal by immobilized biocatalysts with magnetite nanoparticles or by solvent-tolerant bacteria, and to obtain valuable intermediates from these heterocycles. Other recent advances have demonstrated the mechanisms of angular dioxygenation of nitrogen heterocycles by microbes. However, these technologies are not yet available for large-scale applications so future research must investigate proper modifications for industrial applications of these processes. This review focuses on recent progress in understanding how microbes degrade S, N and O heterocycles. Abstract | Full Text | PDF (425 kb) |
| Microbial denitrogenation of fossil fuels Trends in Biotechnology, Volume 16, Issue 9, 1 September 1998, Pages 390-395 Michael J. Benedik, Philip R. Gibbs, Robert R. Riddle and Richard C. Willson Abstract The microbial degradation of nitrogen compounds from fossil fuels is important because of the contribution these contaminants make to the formation of nitrogen oxides (NO) and hence to air pollution and acid rain. They also contribute to catalyst poisoning during the refining of crude oil, thus reducing process yields. We review the current status of microbial degradation of aromatic nitrogen compounds and discuss the potential of microbial processes to alleviate these problems. Abstract | Full Text | PDF (106 kb) |
| Carbohydrate Arrays for the Evaluation of Protein Binding and Enzymatic Modification Chemistry & Biology, Volume 9, Issue 4, 1 April 2002, Pages 443-454 Benjamin T Houseman and Milan Mrksich Summary This paper reports a chemical strategy for preparing carbohydrate arrays and utilizes these arrays for the characterization of carbohydrate-protein interactions. Carbohydrate chips were prepared by the Diels-Alder-mediated immobilization of carbohydrate-cyclopentadiene conjugates to self-assembled monolayers that present benzoquinone and penta(ethylene glycol) groups. Surface plasmon resonance spectroscopy showed that lectins bound specifically to immobilized carbohydrates and that the glycol groups prevented nonspecific protein adsorption. Carbohydrate arrays presenting ten monosaccharides were then evaluated by profiling the binding specificities of several lectins. These arrays were also used to determine the inhibitory concentrations of soluble carbohydrates for lectins and to characterize the substrate specificity of β-1,4-galactosyltransferase. Finally, a strategy for preparing arrays with carbohydrates generated on solid phase is shown. This surface engineering strategy will permit the preparation and evaluation of carbohydrate arrays that present diverse and complex structures. Summary | Full Text | PDF (394 kb) |
Copyright © 2005 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 89, Issue 6, L58-L60, 1 December 2005
doi:10.1529/biophysj.105.073718
Biophysical Letters
S. Guobin*, †,
,
, Z. Huaiying*, †, C. Weiquan*, †, X. Jianmin* and L. Huizhou*, 
* Laboratory of Separation Science and Engineering, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100080, China
† Graduate School of the Chinese Academy of Sciences, Beijing, China
Address reprint requests and inquiries to Dr. Shan Guobin, Fax: 86-10-62554264.Recently, biodesulfurization of petroleum products has received growing attention as the production of ultra-low-sulfur products 1. However, it is still not a commercial technology because of some problems, such as desulfurization rate, bioreactor design, and the volumetric ratio between the oil and aqueous phases. Among these, desulfurization rate represents the main limiting factor for an industrial application of the biotechnological process. Many progresses have been done in improvement of biodesulfurization rate in the last years by increasing the activity of biocatalysts. Despite considerable progress in improving the expression and copies of the key enzymes 2,3, the flux through the system is still too low for widespread commercial applications 1. Setti et al. 4 and Mehrnia et al. 5 reported that transfer of polycyclic aromatic sulfur heterocycle (such as DBT) from the oil to the water (and then from the water to the cells) can limit the rate of its metabolism.
In this study, a novel biodesulfurization technology was developed by assembling γ-Al2O3 nanosorbent, which can selectively adsorb DBT (a model polycyclic aromatic sulfur heterocycle) from the organic phase, on the surfaces of microbial cell. The approach to increase the rate of biodesulfurization is based on the improvement of transfer rate of DBT.
Pseudomonas delafieldii R-8 6, was isolated from the sewage pool of Shengli oil field in China, and has the ability to convert DBT to 2-hydroxy-biphenyl (2-HBP) and sulfate.
We synthesized γ-Al2O3 nanosorbent by the following method. We dissolved 25g Al(NO3)3·9H2O in 100ml distilled water including 0.1g of cetyltrimethylammonium bromide (CTAB), and then added dropwise a 10% of NH4HCO3 aqueous solution including 0.1g of CTAB. The addition was stopped until the sol was formed. The additional amount of NH4HCO3 aqueous solution was ∼50ml. To continue to stir for 1h, and then age for 48h, the products were dried in vacuum for 5h at 80°C. Finally, γ-A12O3 nanosorbents were obtained by sintering at 600°C.
Gamma-Al2O3 nanosorbents (0.1g) and 0.5g of dry cells were added into 50ml of saline water (8.5% NaCl). The cells assembled with γ-Al2O3 nanosorbents were harvested and vacuum-dried at −4°C. Each cell preparation (the aforementioned γ-Al2O3-cells or 0.5 of dry cells) was suspended in 15ml phosphate buffer (0.1M, pH=7.0), and the suspension was mixed with 15ml of model oil (5.0mM DBT in n-dodecane). The reaction was carried out in 100-ml flasks at 30°C on a rotary shaker at 180rpm.
FIGURE 1ab, are two transmission electron microscope (TEM) images of γ-Al2O3 nanosorbent with different magnifications (×10,000 and ×200,000). It is clearly shown that γ-Al2O3 sorbents prepared are very thin long-fiber shape. Its length is ∼100nm, and its width is only a few nanometers. Thus, the size of the sorbent is much smaller than that of microbial cell, which is about a few micrometers.
FIGURE 2ab, are TEM images of free cell and microbial cell assembled with γ-Al2O3 nanosorbents, respectively. The γ-Al2O3 nanosorbents were efficiently assembled on the surfaces of microbial cell as shown in Fig. 2.
To investigate the adsorptive ability of γ-Al2O3 nanosorbents, an adsorptive process was performed in normal pressure, which 0.1g sorbents were added into 5mL model oil containing 5.0mM of DBT and 5.0mM of 2-HBP. Fig. 3 shows the adsorptive curve of γ-Al2O3 nanosorbents at 30°C. During the first 0.5h, DBT and 2-HBP concentrations were, respectively, reduced to 2.69 and 2.85mM from 5.00mM. According to Fig. 3, the sorbents have been saturated with DBT and 2-HBP for <0.5h. So, the adsorptive rate of γ-Al2O3 nanosorbents was >446mmolkg−1h−1.
With the purpose of understanding the desulfurizing activity of the γ-Al2O3-cells, we tested the desulfurization rates of free cells and the γ-Al2O3-cells in model oil containing 5.0mM of DBT, respectively. Fig. 4 shows that the consumption of DBT and the production of 2-HBP using free cells and γ-Al2O3-cells in the model oil. During the first 0.5h, the rate of DBT consumption by the γ-Al2O3-cells is ∼4.93-fold higher than that by free cells. However, during the same time, the rate of 2-HBP produced by the γ-Al2O3-cells is only 1.02-fold higher than that by free cells. The rate of DBT consumption is not consistent with that of 2-HBP produced in model oil. However, during the subsequent 1.0h, both the rates of DBT consumption and 2-HBP produced by the γ-Al2O3-cells are the same, which are ∼1.73-fold higher than those by free cells. It is because that the γ-Al2O3 nanosorbents can adsorb DBT from model oil, and the rate of adsorption is far higher than that of BDS (Fig. 2). The adsorption process can increase the rate of DBT transfer. During the first 0.5h, a part amount of DBT molecules, ∼0.117mmol (DBT consumed+2-HBP produced)/g(sorbent), was adsorbed into the pores of γ-Al2O3 nanosorbent, which resulted in the reduction of DBT and 2-HBP concentrations in oil phase. However, DBT molecules of these cannot be reacted and converted to 2-HBP by microbial cells. Besides, 2-HBP molecules of these produced were adsorbed into the γ-Al2O3 nanosorbents and could not be detected in oil phase. Therefore, the rate of DBT consumption in oil phase was higher than that of 2-HBP produced, detected in oil phase, during the first time. On the other hand, once the pores of γ-Al2O3 nanosorbents were saturated with DBT and 2-HBP molecules, the consumption of DBT in oil phase can completely be used to convert to 2-HBP, which also was completely transferred to oil phase. Thus, the increase of DBT consumption rate was equivalent to that of 2-HBP production rate after the saturation of sorbents with DBT. The final concentration of 2-HBP produced by γ-Al2O3-cells was ∼3.83mM, less than the initial concentration of DBT. It may deduce that ∼0.012mmol of DBT and 2-HBP were adsorbed into the pores of γ-Al2O3 nanosorbent.
The biodesulfurization rate of R-8 cells has been improved by γ-Al2O3-cell (Fig. 4). It is because that the desulfurization rate was mainly limited by the following two factors, i.e., catalytic activity of dsz enzymes in cells and the rate of mass transfer from oil phase to the cell body through aqueous phase. The adsorption of γ-Al2O3 nanosorbents to DBT can accelerate the DBT transfer from aqueous phase to the cell surfaces, which results in the increase of desulfurization rate. According to Fig. 3, the adsorptive rate of the γ-Al2O3 nanosorbent is >446mmolkg−1h−1, which is far higher than the desulfurization rate of microbial cells. Thus, DBT molecules can be quickly congregated on the cell surface, where nanosorbents were located. Consequently, the DBT molecules can be transported into cell for biodesulfurization reaction. Thus, transfer limitation of the DBT molecules can be eliminated to some extent, which results in the improvement of biodesulfurization rate.
We acknowledge the financial support of the State Major Basic Research Development Program (China) (grant No. G2000048004), the National High Technology Research and Development Program (China) (No. 2002AA213041), and the National Natural Science Foundation of China (No. 30370046).
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