| Stark Spectroscopy on Photoactive Yellow Protein, E46Q, and a Nonisomerizing Derivative, Probes Photo-Induced Charge Motion Biophysical Journal, Volume 84, Issue 5, 1 May 2003, Pages 3226-3239 L.L. Premvardhan, M.A. van der Horst, K.J. Hellingwerf and R. van Grondelle Abstract The change in the electrostatic properties on excitation of the cofactor of wild-type photoactive yellow protein (WT-PYP) have been directly determined using Stark-effect spectroscopy. We find that, instantaneously on photon absorption, there is a large change in the permanent dipole moment, , (26 Debye) and in the polarizability, , (1000Å). We expect such a large degree of charge motion to have a significant impact on the photocycle that is associated with the important blue-light negative phototactic response of . Furthermore, changing E46 to Q in WT-PYP does not significantly alter its electrostatic properties, whereas, altering the chromophore to prevent it from undergoing isomerization results in a significant diminution of and We propose that the enormous charge motion that occurs on excitation of 4-hydroxycinnamyl thioester, the chromophore in WT-PYP, plays a crucial role in initiating the photocycle by translocation of the negative charge, localized on the phenolate oxygen in the ground state, across the chromophore. We hypothesize that this charge motion would consequently increase the flexibility of the thioester tail thereby decreasing the activation barrier for the rotation of this moiety in the excited state. Abstract | Full Text | PDF (241 kb) |
| Conformational Changes in the N-Terminal Region of Photoactive Yellow Protein: A Time-Resolved Diffusion Study Biophysical Journal, Volume 94, Issue 6, 15 March 2008, Pages 2187-2193 Yuji Hoshihara, Yasushi Imamoto, Mikio Kataoka, Fumio Tokunaga and Masahide Terazima Abstract The kinetics of conformational change in the N-terminal region of photoactive yellow protein (PYP) was studied by the time-resolved diffusion measurement. The transient grating signal that represented the protein diffusion of the ground state and pB state depended on the observation time range. An analysis of the signal based on the time-dependent diffusion coefficient clearly showed that protein diffusion changed with a time constant of 170s, corresponding to the pR→pB′ transition. Since a previous diffusion study of N-terminal truncated PYPs had revealed that the change in the diffusion coefficient reflected the unfolding of the -helices in the N-terminal region of PYP, the results indicate that this unfolding took place at the same rate as the pR→pB′ transition. This demonstrates that the response of the conformational change in the N-terminal region was quite fast, probably due to changes in a specific hydrogen-bonding network of this domain. Abstract | Full Text | PDF (282 kb) |
| The Solution Structure of a Transient Photoreceptor Intermediate: Δ25 Photoactive Yellow Protein Structure, Volume 13, Issue 7, 1 July 2005, Pages 953-962 Cédric Bernard, Klaartje Houben, Nocky M. Derix, David Marks, Michael A. van der Horst, Klaas J. Hellingwerf, Rolf Boelens, Robert Kaptein and Nico A.J. van Nuland Summary The N-terminally truncated variant of photoactive yellow protein (Δ25-PYP) undergoes a very similar photocycle as the corresponding wild-type protein (WT-PYP), although the lifetime of its light-illuminated (pB) state is much longer. This has allowed determination of the structure of both its dark- (pG) as well as its pB-state in solution by nuclear magnetic resonance (NMR) spectroscopy. The pG structure shows a well-defined fold, similar to WT-PYP and the X-ray structure of the pG state of Δ25-PYP. In the long-lived photocycle intermediate pB, the central β sheet is still intact, as well as a small part of one α helix. The remainder of pB is unfolded and highly flexible, as evidenced by results from proton-deuterium exchange and NMR relaxation studies. Thus, the partially unfolded nature of the presumed signaling state of PYP in solution, as suggested previously, has now been structurally demonstrated. Summary | Full Text | PDF (469 kb) |
Copyright © 2005 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 89, Issue 6, L64-L66, 1 December 2005
doi:10.1529/biophysj.105.075275
Biophysical Letters
L. Premvardhan*,
,
, M.A. van der Horst†, K.J. Hellingwerf†, * and R. van Grondelle*
* Department of Biophysics and Physics of Complex Systems, Faculty of Sciences, Vrije Universiteit, Amsterdam, The Netherlands
† Department of Microbiology, Swammerdam Institute for Life Sciences, Universiteit van Amsterdam, Amsterdam, The Netherlands
Address reprint requests and inquiries to L. Premvardhan.
=19 Debye) on photon absorption. The formation of this charge-separated species, in the excited state, precedes the cis → trans isomerization of the pB cofactor and the regeneration of pG. The large
, reminiscent of that produced on the excitation of pG, we propose, induces twisting of the cis cofactor as a result of translocation of negative charge, from the hydroxyl oxygen, O1, toward the C7-C8 double bond. The biological significance of this photoinduced charge transfer reaction underlies the significantly faster regeneration of pG from pB in vitro, on the absorption of blue light.The physiologically important blue-light negative phototactic response of the bacterium Halorhodospira halophila has been linked to photoactive yellow protein (PYP) 1. The PYP photocycle associated with this response (Scheme 1), is initiated by the excitation of the 4-hydroxycinnamyl thioester (4-HcT) cofactor (λmax=446nm). In particular, excitation of the 4-HcT cofactor in the receptor state, pG, was found to produce a 26 Debye change in the static dipole moment,
2, thereby increasing the flexibility of the thioester tail to allow for the rotation of the cofactor in the excited state 3. Subsequently, trans → cis isomerization generates pB (λmax=355nm) and triggers partial unfolding of the protein 4,5. This study aims to understand the link between the excited-state electronic properties of pB and the driving force for the accelerated recovery of pG, from pB, on light absorption (see ellipse in Scheme 1). To this end, Stark spectroscopy is used to determine the change in electronic properties on photon absorption by the neutral (protonated) cis form of the 4-HcT cofactor (Scheme 2) of the pB intermediate.
To facilitate the study of the pB intermediate the M100A mutant is employed, which has previously been used to characterize the ground-state recovery reaction in PYP 6. Effectively, the electron-donating capability of M100 is severely restricted due to the elimination of its electronegative sulfur atom. Consequently, the recovery of pG from pB in the M100A protein is decreased ∼1000-fold 6 and pB is therefore more easily trapped at 77K. Note that the mutation does not change the amino acid residues surrounding the cofactor and the environmental effects exerted in the protein pocket remain similar to that in the wild type (see Supplementary Material ).
The room- and low (77K)-temperature absorption spectra of M100A in glycerol/buffer solution are presented in Figure 1a. The former is shown before (dotted-dashed line), and after (light solid line), illumination at 450nm. Depending on the duration of illumination, the 77-K spectra (bold solid lines) are of two types: I, mostly enriched with pB; and II, containing a mixture of pG and pB. The absorption maxima of both pG and pB blue shift on lowering the temperature: pG to 444±2nm from 448nm 2, and pB to 345±2nm from 355nm. The protocol and methodology for fitting the Stark spectra for I (Figure 1b) and II (Figure 1c) are described in the Supplementary Material .
The sample containing mostly pB is fit to the absorption band between 24,500 and 32,000cm−1 (Figure 1b) to yield a change in the static dipole moment,
, of 19±3 D, and a 350±200Å3 component corresponding to the sum of the transition moment polarizability and difference electronic polarizability. The Stark spectrum of II, containing comparable amounts of pG and pB (Figure 1c), is fit to pG (20,000–25,000cm−1) and pB (>25,000cm−1) independently, by deconvolving the absorption spectrum into two bands. This fit yields a
of 29±2 D in the region of pG absorbance, in agreement with previous measurements 2, whereas the
for pB, in this case, is found to be 20% larger than for I (Figure 1b). This discrepancy likely arises from the inherent increase in the inaccuracy of the fit for II, as the Stark signal of pB in spectrum II is significantly smaller than in I. Although the absorbances of pG and pB in II are comparable (Figure 1a), the Stark signal of pG is, however, much larger and overwhelms the pB Stark signal. This leads to the asymmetry of the pB signal at the red edge of II (26,000–27,000cm−1) not evident in spectrum I. Alternatively, this asymmetry could arise due to the superposition of the Stark signal from an intermediate that potentially gives rise to the shoulder, marked with an asterisk (*) in Figure 1c, in the red edge of pB absorption. The presence and relative abundance of this intermediate appears to depend on pG, from which it is therefore likely to originate. Attempts to gain further insight about this species, by independently analyzing this band, lead to unstable solutions and was therefore not pursued further.
Fit I, to the sample composed mostly of pB, yields a 19 Debye
for the neutral cis isomer of 4-HcT. Such a large excited-state dipole moment for pB, heretofore unknown, would be expected to have a significant effect on the excited-state reactivity of the cofactor, as would the large local field generated in the vicinity of the cofactor, resulting from the charge separation in the excited state, on its surroundings.
In pG, charge transfer from O1 to C7 produces a 26 Debye
and results in an increase in the flexibility of the C4-C7-C8-C9 backbone 3. Thus, the twisting of the C7-C8-C9 moiety, and the rotation of the carbonyl group, drives the trans-cis isomerization reaction. A similar charge-transfer pathway in pB would provide added impetus for the “reverse” geometry distortion, despite the somewhat smaller
of pB compared to that of pG. Indeed, the hydroxyl oxygen, in the para position, of the neutral cofactor of pB is similar in its electron donating functionality to the oxyanion of the trans cofactor in pG. (Due to the extension of the π-conjugation, both −O− and −OH can donate an electron from the lone pair, and in general are considered to activate the phenyl ring for electrophillic substitution.)
Therefore, electron donation from O1 to C7, as in pG, would increase the flexibility of the C4-C7-C8-C9 backbone and decrease the barrier to twist in the excited state. A neutral hydroxyl oxygen, as in pB, is however, a weaker electron donor than the −O− in pG, and could partly account for the smaller
of pB (the 19 Debye value suggests that 80% of an electronic charge is transferred from O1 to C7 that are ≈5Å apart). Interestingly, the 19 Debye
of pB is more than twice that measured for the isolated neutral all-trans 4-HcT chromophore 3, suggesting a role of the protein environment in tuning the electronic properties of the chromophore 5, beyond that induced by structural deformation. One possibility is that hydrogen bonding with Arg-52 7 would increase the electronegativity and electron-donating capability of O1. After charge transfer, decrease in charge density on O1 would weaken the hydrogen bond with Arg-52 (Scheme 2) to disrupt the “tether” holding the cofactor, and promote twisting as well.
In brief, our results suggest that the photoreactivity of pB is induced by the charge-separated state produced on excitation. Furthermore, the impetus for the faster regeneration of the ground-state species, pG, would be provided by the photoinduced charge transfer reaction, and could explain the light-accelerated recovery of wild-type PYP in vitro 8.
L.P. and R.v.G. acknowledge the Foundation for Fundamental Research on Matter (FOM) of The Netherlands and the Dutch Science Organization (NWO) for financial support.
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