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Department of Chemical Engineering, Stanford University, Stanford, California
Correspondence: Address reprint requests to G. G. Fuller, Tel.: 650-723-9243; E-mail: ggf{at}stanford.edu.
| ABSTRACT |
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| INTRODUCTION |
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-secretase (1
-secretase cleavage is mediated by the activity of presenilins normally localized to the endoplasmic reticulum and pre-Golgi compartments.
Though the assemblage kinetics of the Aß aggregates is well known, exactly how this diverse molecular species, residing in multiple subcellular sites, elicits cellular toxicity is not well understood. There are a number of different points of view as to the toxicity of Aß. Early work has shown that Aß accumulation in APP mutant neurons inhibits the activities of the proteasome (3
). Amyloid peptide toxicity may be due to its interaction with metals such as copper, and proteins like acetylcholinesterase (4
). Neuronal signaling is affected by amyloid peptide interaction with transducers of the Wnt/ß-catenin signaling pathway, including ß-catenin and glycogen synthase kinase 3ß resulting in toxicity (4
). There are several membrane binding proteins known to be associated with amyloid-triggered toxicity (5
). Others believe it to be either pore formation or the formation of nanoaggregates that is responsible for disrupting membrane functions (6
9
). Although this is the interest of this study, as we see significant lipid association with amyloid peptides and associated changes in the lipid and amyloid organization, it should be noted that the amyloid toxicity is not exclusively correlated to the lipid binding alone. As membrane lipids are intimately associated with these peptides in both soluble and assembled form, it is crucial to know how the different assemblage states of the peptides affect membrane dynamics and functionality. This is particularly important as there is compelling evidence indicating that the toxicity of these aggregates lies in the soluble oligomers and not with the matured fibrils (polymers) (10
), since for the same number of monomers we have many more soluble oligomers than fibrils. It is not known whether the toxicity is due to the size of the soluble oligomers or to the number of them present in the cells, but the interaction of the membrane lipids with the peptides, as well as the change in aggregate size, is important. These structurally transformed aggregates are immobile and known to interact with cells in their immediate proximity (11
,12
). While these processes are well established, there are some pertinent questions that remain unanswered.
What is the relationship between the fibrils and soluble oligomers with respect to membrane malfunction? How stable are the fibrils when in contact with the cell membrane? Is it possible to decompose the toxic nano-aggregates into smaller, nontoxic aggregates in the membrane micro environments or vice versa? There is a growing consensus suggesting that amyloidogenic processing occurs in domains in the membrane enriched with secretases BACE-1 and
-secretase. Recent efforts in the quest for a vaccine for AD suggest that the matured Aß fibrils produced by BACE-1 and
-secretase are dynamic entities that can be broken down by antibodies in transgenic animals and AD patients' brains (13
). However it should not be ruled out that this could be due to a mass action of the antibodies, or via stimulation of cellular clearance mechanisms (14
). Grimm et al. (15
) recently proposed that Aß142 promotes breakdown of the lipid sphingomyelin as part of its physiological function, whereas Aß140 reduces the cholesterol production. Hence understanding the Aß fibril assemblage modulation could be very important to discern these vital processes. Neuronal cells are highly sensitive to microrheological changes because of their highly polarized morphology and large number of specialized microdomains.
In this study we have investigated the interaction of fibrils and soluble oligomers with cell membrane model systems. Previous studies with model monolayers have demonstrated that mixtures of lipids mimicking the composition of the outer leaflet of plasma membranes exhibit a similar kind of domain structure and stability to that of live cells (16
). However, even though these studies were performed using a lipid mixture, they still do not represent the native condition of cells. This is because of the lack of actin, cytoskeleton, membrane proteins, and the inner lipid leaflet. Actin alone has been shown to act as a barrier that hinders the diffusion of membrane lipids (17
19
). Even in regard to this, the lipid monolayer is a good model system for studying the interactions between lipids and peptides. This system was used in the single-particle tracking (SPT) experiments and the atomic force microscopy (AFM) experiments as well as in part of the transmission electron microscopy (TEM) study. Another model system for the cell membrane is represented by giant vesicles. These vesicles have a diameter
110 µm and the interior of these vesicles consists of freely moving smaller nested vesicles. This is a minimal system with great relevance to membrane protein interactions where both intervesicular transport as well as lipid-peptide interactions can be visualized. The giant-unilamellar vesicle (GUV) system was used in the fluorescence resonance energy transfer (FRET) experiments as well as in part of the transmission electron microscopy (TEM) study. This system is far from the cellular bilayer where the lipids are distributed asymmetrically over the inner and outer leaflets. Both exofacial and cytofacial leaflets of the cell membrane bilayer are different in lipid composition and microfluidity. Furthermore, our experimental condition does not provide the micro environment of the cytoskeleton interior that is present in vivo (20
). These caveats are kept in mind when interpreting the current data. Despite all these shortcomings, this system is easy to replicate in vivo with different membrane components. Specifically it is easy to add amyloid peptide in different aggregates and study their interaction. Using these model systems we observe that the amyloid aggregates have an affinity for the lipid bilayer in giant vesicles. In lipid monolayers we observe drastic interfacial rheological changes associated with peptide aggregate binding. We also observe fragmentation of matured fibrils, as well as fragmentation of the protofibrils, on association with lipids in our model systems. In this work, we show that Aß peptide, whatever the form of aggregate, might be involved in the generation of immobile micro domains which will have drastic cellular implications particularly in neuronal cells.
| MATERIALS AND METHODS |
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Peptides
Aß142 and Aß140 were prepared by Fmoc-solid phase peptide synthesized in W.M. Keck Facility at Yale University (New Haven, CT). The peptides were purified using RP-HPLC, analyzed by matrix-assisted laser desorption ionization time of flight mass spectrometry and lyophilized at the PAN facility Stanford University. FITC-Aß142 and Aß421 were obtained from AnaSpec (San Jose, CA).
Aß peptide preparation
The Aß140 and Aß142 were suspended in 90:10% hexafluoroisopropanol/trifluoroacetic acid for pretreatment. After complete dissolution, the solvent was removed using dry Argon gas. The remaining film was placed in a vacuum chamber. The film was redissolved in a 1 mM NaOH solution, and the pH was adjusted to 7.4 using a 20 mM NaOH solution to obtain Aß peptide in monomeric form. This solution was aliquoted and lyophilized again. The lyophilized powder was dissolved in phosphate-buffered saline (PBS) at pH = 7.4 and 155 mM NaCl to a working concentration of 200 µM. To prepare the soluble oligomer fractions of the peptides, the Aß142 sample was placed at 4°C for 24 h and the Aß140 was incubated for 72 h at room temperature. Mature fibrils were prepared by incubating the lyophilized peptide dissolved in PBS along with 5% preformed seed at 37°C for 1530 days. The monomers were thereafter separated from the fibrils by centrifuging the sample at 5000 rpm for 10 min, thereby pelleting the matured fibril, leaving the monomer in the supernatant which is removed. When used, the working concentration of the peptides was 200 nM.
Miniature Langmuir trough
In studying the Aß-lipid monolayer interactions, a need arose for a miniature Langmuir trough. The reasons include reactant amounts and a need to improve single particle tracking (SPT) measurements. There have been a few attempts at making miniature Langmuir troughs, the goal usually being aimed at improving diffusion measurements at the air-water interface and reducing contamination. Lipid monolayer tracking experiments at the air-water interface have inherent problems not found in supported bilayer experiments, due to the influence of air currents and convective flows in the subphase. There are a few different approaches to address these problems; one uses a circular ring residing in the subphase right below the interface in a Langmuir trough, which acts as a barrier to subphase flow (21
). Another group (22
) encapsulated their setup under glass and reduced the trough size to suppress air flow and reduce contamination. The resulting trough was small and light, allowing it to fit on a microscope stage. Our approach is along the same lines, reducing the size; the "trough" that we constructed consists of a sessile drop sitting on a polydimethylsiloxane stage with an inlet and an outlet (Fig. 1). Surrounding the sessile drop are glass sides to reduce air flow, evaporation, and contamination; however, the setup is not entirely enclosed. The setup contains three droplet stages, to facilitate multiple experiments at the same time. The area per molecule is adjusted by either injecting more subphase liquid into the interior of the drop or by removing some of the subphase. Reduced subphase volume is of importance when, in our case using hybridized oligonucleotides as linkers between monolayer lipids and fluorescently tagged subphase vesicles as probes, this system is described in Single Particle Tracking (SPT). A reduced subphase volume allows for shorter hybridization time and smaller amounts of analyte. This setup has a subphase volume of
40 µL, which is approximately two orders-of-magnitude less than the subphase of a conventional Langmuir trough. With this setup we see a great reduction in convective flow and also a much shorter experiment turnover time. Formation of a drop is accomplished by injecting subphase liquid through the inlet channel; the size of the drop can be further adjusted by either injecting more liquid through the inlet or by aspirating the subphase through the outlet channel. A monolayer can then be spread on top of the drop; all lipid monolayers are spread using a chloroform solution to ensure quick solvent evaporation and immiscibility, depositing the lipids at the interface only. The Aß peptides in PBS solution are introduced through the inlet channel, and simultaneously, the same amount of subphase is withdrawn using the outlet, so that the volume of the drop is maintained constant. To remove excess peptides or other material that has been introduced into the system, clean subphase liquid can be injected at the same time as the subphase with excess material is aspirated. The drawback with this smaller trough is that there are some problems when air bubbles form and rise to the interface; the experiment then needs to be aborted, and we do not yet have a way of measuring the surface pressure. The miniature Langmuir trough was used for the SPT, AFM, and part of the TEM experiments.
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Single particle tracking (SPT)
To deduce the interfacial rheological properties of the monolayers and the effect of the Aß peptides, SPT was implemented (27
,28
). Similarly to AFM experiments already described, experiments were conducted using pairs of drops, but this time, the reference system was that of a lipid monolayer alone (POPG/DOPA) spread at the air-water interface, and the other system was that of a lipid monolayer, spread first, after which peptide aggregates were introduced into the interior of the drop. Tracking of the lipids was facilitated using a technique developed by Yoshina-Ishii and Boxer (29
). This technique allows for "smart tethering" of fluorescently labeled vesicles to lipids in a monolayer or bilayer. The smart linker is a modified lipid, where a oligomer 16-bases-long is attached covalently to the lipid headgroup. Using this type of linker you can select for the vesicle that has the complementary lipid attached to it. In this study we labeled egg-yolk phosphatidylcholine vesicles with 1.5% Texas Red (TR) lipids. Enough DNA-lipids were added to allow for a maximum of one DNA-lipid per vesicle. This way we reduce the likelihood of getting more than one tether per vesicle. However, if we have perfect insertion of the DNA-lipid into the vesicle, we probably have a number of vesicles that do not have the DNA-lipid in it, so they will not attach to the monolayer and can be flushed away. A monolayer with 1:10,000 DNA-lipids is spread on top of the drop on the "trough", and once the chloroform from the spreading solution evaporated, TR-labeled vesicles with the complimentary lipids are injected into the subphase using the injection channel in the stage. Once the complimentary oligonucleotides in the TR-labeled vesicles have hybridized with the DNA-lipids in the monolayer, these vesicles are constrained to the two-dimensional air-water interface. After hybridization, the subphase is flushed with clean buffer to remove any excess fluorescent vesicles not attached to the monolayer. If Aß aggregates are used in the system, these are injected into the subphase after the monolayer is spread, but before the injection of the fluorescent vesicles. After incubation for 10 min, the subphase is flushed to remove any peptide not yet interacting with the monolayer to avoid interactions between the peptide and the vesicles. A Nikon Microphot-SA fluorescence microscope (Nikon, Marunouchi, Tokyo) equipped with a Princeton Instruments PentaMAX intensified CCD camera (Princeton Instruments, Trenton, NJ) was used to image the SPT experiments. Images were captured at a rate of 11 frames per second and analyzed using Metamorph v.6.3 from Molecular Devices (Downingtown, PA). Further analysis was conducted using Microsoft Excel (Microsoft, Redmond, WA).
Confocal microscopy, FRET, and giant vesicle preparation
Confocal microscopy
The membrane-Aß peptide interaction in giant vesicles was studied using confocal microscopy utilizing the fluorescence resonance energy transfer (FRET) technique. To facilitate these studies, a five-well sample viewer was prepared for viewing the samples. Using a diamond-tipped drill, 10 holes were drilled in a microscopy slide. Six strips of double-sided tape were used to form five channels, each channel with a hole at both ends. A coverslip functionalized with a His-tag protein was then attached, using double-sided tape and epoxy glue to form five enclosed channels, each with an inlet and an outlet. The His-tag protein allowed us to fix the vesicles to the coverslip. The sample is viewed through the No. 1.5 coverslip, covering the channels. An inverted confocal microscope, Leica SP2 AOBS, was used to capture the images (Leica, Wetzlar, Germany). The excitation wavelengths were 488 nm (FITC-Aß) and 543 nm (TR).
Giant vesicle preparation
Phospholipid stock solutions were dissolved in chloroform to yield a concentration of 0.2 mg/ml. Giant unilamellar vesicles (GUVs) with POPG, DOPA, Ni lipids, and TR-lipids (1:1:0.02:0.01 molar ratio) were prepared using the rotary evaporation method (30
). Aliquots of giant vesicles suspended in PBS at pH = 7.4 were used in the FRET experiments.
Fluorescence resonance energy transfer (FRET)
Fluorescence resonance energy transfer (FRET) is a robust and sensitive technique widely used to study the distance between two different fluorophores and is only possible when two fluorophores are in close proximity (31
). This technique has been used for similar systems where the interactions between peptides and membrane lipids have been studied (32
,33
). To accomplish FRET, a donor fluorophore is excited by an incoming photon. If an acceptor fluorophore is in close proximity, the acquired energy can be transferred nonradiatively between the fluorophores, and a photon of lower energy is emitted from the acceptor fluorophore. The efficiency of FRET is dependent on the inverse sixth power of the distance between the molecules, making this a very useful method for visualizing and studying the incorporation of peptides into a bilayer. Other techniques for studying the incorporation of the peptide into bilayers could be accomplished by incubating the peptide with vesicles followed by centrifugation and spectroscopic analysis. The major disadvantage with that technique is that it is harder to separate larger aggregates from the vesicles, and also requires two stepswhereas the FRET technique used here is a one-step technique in which incorporation is easily seen visually. The increase in FRET intensity of the acceptor or reduction of the donor fluorescence intensity gives a direct measure of proximity information between the donor-acceptor carrying moieties.
Transmission electron microscopy (TEM)
Transmission electron microscopy (TEM) was facilitated using a JEOL 1230 electron microscope (JEOL, Peabody, MA) at the Cell Sciences Imaging Facility at Stanford University. All the TEM work was conducted with the subphase consisting of PBS. A drop of PBS is formed on the same sample stage described earlier; the Aß peptide aggregate is injected into the interior of the drop. If a lipid monolayer is desired for the experiment, this is spread before injection of the peptide. The system is allowed to equilibrate for 15 min; at that time a TEM grid is brought to the air-water interface and the aggregates are transferred horizontally. After the peptides have been fixed to the grid, the uranyl acetate (UA) stain is applied with a drop of 2% UA solution on the back side of the grid. The drop is allowed to engulf the grid and after 5 min, the grid is washed three times by immersion in a rinse made of the same solution, but without the UA. Since the peptides and lipids are already fixed to the surface when the stain is applied, there should be minimal effect of the stain on the peptide structures.
| RESULTS AND DISCUSSION |
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-synuclein (40
-synuclein membrane interactions (43
Aggregate structures as observed by AFM
To further explore the nature of Aß140 aggregates in the membrane environment, Aß140 assemblages were incorporated into lipid monolayers and studied using AFM. The lipids used in this system have a negative charge, making them more representative of the inner leaflet of the cell, where the peptides are formed. Fig. 3 A depicts an AFM image of a DOPA/POPG (1:1) monolayer without the peptide. The lipid monolayer alone forms a smooth film, with wavelike features that are attributed to the separation of the lipids into smaller domains when the system is dehydrating. The lighter regions in the height mode AFM images represent higher topography. In systems with lipids, the darker regions are assigned to the monolayer absorbed to the silicon wafer, and in the systems without lipids, the darker regions are assigned to the silicon wafer itself (23
,24
). Injecting the soluble oligomers alone and letting them absorb to the air-water interface results in polydisperse flat discoid aggregates (Fig. 3 B), these objects not only have a height difference (325 nm taller than the silicon wafer), but also a difference in viscoelastic response, which is apparent in the phase mode image (data not shown). The soluble oligomers adsorbed at the air-water interface form domains that are between 3- and 25-nm high, which is higher than the fibrils or the soluble oligomers of Aß142 on graphite or mica substrates (25
). This suggests that the air-water interface induces lateral aggregation of the Aß140 peptides on the water surface. These domains are flat, with a maximum height of 21 Å. Solid-state NMR studies suggest a parallel ß-helical arrangement, where two adjacent strands of Aß142 pack with a C
-C
distance of 4.8 ± 0.5 Å (44
). The smallest observed peptide peaks are high enough to accommodate four units of Aß140 peptide monomers, indicating that soluble oligomers consist of Aß140, arranged one above the other. A lateral assembly of several units will result in a discoid of 25 nm in diameter as observed in the AFM (25
). Previous studies indicate that monolayers can condense upon transfer to a solid support and form solid phase islands consisting of lateral aggregates (45
). A striking difference in aggregate distribution is observed when the peptides are injected into a drop with a lipid monolayer at the air-water interface (Fig. 3 C). When the introduced peptide aggregates incorporate into the lipid monolayer, the average diameter of the disklike soluble oligomers is reduced from 25 nm to 16 nm. The lipids further reduces the average height of the aggregates from 13.3 Å to 9.5 Å. Fig. 3 D displays the change in aggregate size in the two different systems. We see a reduction in aggregate size and also a change in the size distribution. The peptide at the air-water interface is fairly polydisperse, whereas, when the same system has interacted with lipids, the size distribution is much narrower. This indicates that the lipids induce fragmentation of the peptide assemblages. An aggregate height of
13.3 Å would represent a trimeric or dimeric peptide aggregate, whereas a height of 9.5 Å would represent a dimer. We find a reduction in aggregate number from three to two soluble oligomer units. Our AFM data suggest that the soluble oligomers at the air-water interface, or soluble oligomers incorporated in a lipid monolayer, accommodate smaller peptide units compared to the findings of previous studies (25
,46
). This could be due to our method of preparation of the sample.
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68 nm. However, when the same fraction is introduced into a drop with a lipid monolayer at the air-water interface, the soluble oligomers of Aß are almost nonexistent in the TEM images. We presume that the soluble oligomers are divided into smaller fragments as seen with the AFM, and that these aggregates are of such a small dimension that their contrast is too low to be visible (Fig. 4 B). Matured Aß fibrils absorbed to the air-water interface and incubated for 1 h appear as a fibrous mesh (Fig. 4 C), with the individual fibers having a diameter of
68 nm and variable length. When these fibrils are incubated in a drop covered by a lipid monolayer for 1 h, they fragment. The fragments appear as a pattern of globular structures of soluble oligomers of
34 nm in diameter. Fig. 4 D shows a fragmentation pattern with generation of globular, short fibrils of 2575 nm in length. This indicates that matured Aß fibrils can generate soluble oligomers in the presence of lipids. In connection with this observation, it is worth mentioning that there is evidence suggesting that, in specific micro environments such as inflammatory conditions, the fibrils also elicit toxicity like that of soluble oligomers (48
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| CONCLUSIONS |
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| ACKNOWLEDGEMENTS |
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Submitted on March 28, 2006; accepted for publication August 15, 2006.
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