| Pulse EPR Detection of Lipid Exchange between Protein-Rich Raft and Bulk Domains in the Membrane: Methodology Development and Its Application to Studies of Influenza Viral Membrane Biophysical Journal, Volume 80, Issue 2, 1 February 2001, Pages 738-748 Kazunori Kawasaki, Jun-Jie Yin, Witold K. Subczynski, James S. Hyde and Akihiro Kusumi Abstract A pulse saturation-recovery electron paramagnetic resonance (EPR) method has been developed that allows estimation of the exchange rates of a spin-labeled lipid between the bulk domain and the protein-rich membrane domain, in which the rate of collision between the spin label and molecular oxygen is reduced (slow-oxygen transport domain, or SLOT domain). It is based on the measurements of saturation-recovery signals of a lipid spin label as a function of concentrations of both molecular oxygen and the spin label. Influenza viral membrane, one of the simplest paradigms for the study of biomembranes, showed the presence of two membrane domains with slow and fast collision rates with oxygen (a 16-fold difference) at 30°C. The outbound rate from and the inbound rate into the SLOT domain (or possibly the rate of the domain disintegration and formation) were estimated to be 7.7×10 and 4.6×10 s, (15s residency time), respectively, indicating that the SLOT domain is highly dynamic and that the entire SLOT domain represents about one-third of the membrane area. Because the oxygen transport rate in the SLOT domain is a factor of two smaller than that in purple membrane, where bacteriorhodopsin is aggregated, we propose that the SLOT domain in the viral membrane is the cholesterol-rich raft domain stabilized by the trimers of hemagglutinin and/or the tetramers of neuraminidase. Abstract | Full Text | PDF (213 kb) |
| Accessibility of Nitroxide Side Chains: Absolute Heisenberg Exchange Rates from Power Saturation EPR Biophysical Journal, Volume 89, Issue 3, 1 September 2005, Pages 2103-2112 Christian Altenbach, Wojciech Froncisz, Roy Hemker, Hassane Mchaourab and Wayne L. Hubbell Abstract In site-directed spin labeling, the relative solvent accessibility of spin-labeled side chains is taken to be proportional to the Heisenberg exchange rate () of the nitroxide with a paramagnetic reagent in solution. In turn, relative values of are determined by continuous wave power saturation methods and expressed as a proportional and dimensionless parameter Π. In the experiments presented here, NiEDDA is characterized as a paramagnetic reagent for solvent accessibility studies, and it is shown that absolute values of can be determined from Π, and that the proportionality constant relating them is independent of the paramagnetic reagent and mobility of the nitroxide. Based on absolute exchange rates, an accessibility factor is defined (0<<1) that serves as a quantitative measure of side-chain solvent accessibility. The accessibility factors for a nitroxide side chain at 14 different sites in T4 lysozyme are shown to correlate with a structure-based accessibility parameter derived from the crystal structure of the protein. These results provide a useful means for relating crystallographic and site-directed spin labeling data, and hence comparing crystal and solution structures. Abstract | Full Text | PDF (271 kb) |
| Azide Reduces the Hydrophobic Barrier of the Bacteriorhodopsin Proton Channel Biophysical Journal, Volume 76, Issue 5, 1 May 1999, Pages 2702-2710 Heinz-Jürgen Steinhoff, Matthias Pfeiffer, Thomas Rink, Oliver Burlon, Matthias Kurz, Jens Riesle, Ester Heuberger, Klaus Gerwert and Dieter Oesterhelt Abstract The sensitivity of a nitroxide spin label to the polarity of its environment has been used to estimate the hydrophobic barrier of the proton channel of the transmembrane proton pump bacteriorhodopsin. By means of site-specific mutagenesis, single cysteine residues were introduced at 10 positions located at the protein surface, in the protein interior, and along the proton pathway. After reaction with a methanethiosulfonate spin label, the principle values of the hyperfine tensor A and the g-tensor were determined from electron paramagnetic resonance spectra measured at 170K. The shape of the hydrophobic barrier of the proton channel is characterized in terms of a polarity index, Δ, determined from the variation of the hyperfine coupling constant A. The maximum of the hydrophobic barrier is found to be close to the retinal chromophore in the proton uptake pathway. The effect of the asymmetric distribution of charged and polar residues in the proton release and uptake pathways is clearly reflected in the behavior of the hydrophobic barrier. The presence of azide reduces the barrier height of both the cytoplasmic and extracellular channels. This finding supports the view of azide and other weakly acidic anions as catalysts for the formation of hydrogen-bonded networks in proton pathways of proteins. Abstract | Full Text | PDF (178 kb) |
Copyright © 2007 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 92, Issue 5, 1573-1584, 1 March 2007
doi:10.1529/biophysj.106.097568
Membranes
Witold K. Subczynski*,
,
, Anna Wisniewska*, †, James S. Hyde* and Akihiro Kusumi‡
* Department of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226
† Department of Biophysics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland
‡ Membrane Mechanisms Project, ICORP, Japan Science and Technology Agency, The Institute for Frontier Medical Sciences, Kyoto University, Shougoin, Kyoto 606-8507, Japan
Address reprint requests to Witold K. Subczynski, Dept. of Biophysics, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226. Tel.: 414-456-4038; Fax: 414-456-6512.Recently, extensive attention has been paid to the cholesterol-dependent liquid-ordered phase in the membrane because of the enhanced interest in membrane microdomains, particularly so-called raft domains or rafts. The interest in rafts spans almost all areas of biomedical research related to cell-cell signaling and trafficking of lipids and proteins in cells (see recent reviews 1,2,3,4,5,6,7,8). Although the clear definition for raft domains in various membranes of cells, particularly for those before extracellular or intracellular stimulation, has to wait for further advancement of raft-related research, it appears that raft researchers could gain some insight into the structure of, and the molecular interactions in, raft domains by understanding liquid-ordered domains and liquid-liquid phase separations in binary or ternary mixtures of lipids including cholesterol and saturated-chain lipids. Simons and Vaz 9 extensively furthered this concept, insisting that, after weighting all the existing observations, “rafts could be considered domains of a liquid-ordered phase.” This statement has not been tested because of the lack of experimental methods that can be applied to the raft domains in live cells 10,11, but what we have learned regarding the molecular components and interactions that lead to the formation of the liquid-ordered phase in artificial membranes is likely to make great contributions for understanding the formation mechanism, structure, lifetime, and dynamics of raft domains in the membranes of cells 3,6,7,8,12,13,14.
Based on this concept, we believe that the efforts to extensively characterize the liquid-ordered domains are important (see Almeida et al. 15 for terminological discussion regarding “phases” and “domains”). In fact, our understanding of the molecular dynamics within and into/out of liquid-ordered domains 16,17,18, their structures and mechanics 4,9,19,20,21, and the dynamics of the whole liquid-ordered domains is making progress 6,22,23,24. However, one of the missing issues in the research in this field is the understanding of the molecular dynamics and structures in the third dimension, namely, in the direction of the depth in the membrane. Because the membrane, and thus the liquid-ordered domain, is not really a two-dimensional structure, knowledge of the molecular events in the depth dimension is important.
In this research, we characterized three-dimensional dynamic structures of liquid-ordered domains. This achievement became possible by use of a very small probe, i.e., molecular oxygen. In this approach, a variety of lipid spin probes were incorporated in the membrane for probing at specific depths and specific domains (Fig. 1), and the rate of collision between molecular oxygen and the nitroxide moiety attached to a specific location in the lipid was measured using the pulse EPR method. Previously, we reported the existence of vertical fluctuations of the nitroxide moiety of stearic acid spin labels toward the polar surface of the lipid bilayers 25,26,27. Measurements were made of bimolecular collision rates between nitroxide moieties at different locations on the alkyl chain. From these studies it can be presumed that distributions of the vertical positions of the nitroxide moiety on n-SASL and n-PC in the membrane exist, with the mean value of each distribution shifting toward the center as the quantum n increases. Positions of carbon atoms in the alkyl chain have been determined by neutron diffraction 28, which showed that the mean positions of these carbons (or free radical moieties attached to those carbons) can be defined with accuracy ±1Å, even in the liquid-crystalline state. Assuming a Gaussian distribution of the labeled segments in the projection on the bilayer normal, these authors report that the time-averaged positional fluctuations increase from 1.5Å for the C-4 position to 3.4Å for the C-12 position. It can be concluded that a nitroxide moiety stays at the position determined by neutron diffraction for most of the time.
Our previous studies indicated that the oxygen collision rate, which is a product of local concentration and local diffusion coefficient of molecular oxygen within the membrane, is a very sensitive measure of the presence and the movement of free volume, which may be very small—just sufficient to contain a single molecule of oxygen in the membrane. The small size and appropriate level of hydrophobicity of molecular oxygen allow it to enter the small vacant pockets that are transiently formed in the lipid bilayer membrane. Therefore, collision rates between molecular oxygen and nitroxide spin labels at specific locations in the membrane are sensitive to the dynamics of gauche-trans isomerization of lipid hydrocarbon chains and to the structural nonconformability of neighboring lipids 29,30,31,32. For example, incorporation of cholesterol into bilayers made of saturated and unsaturated phosphatidylcholines greatly reduces the oxygen collision rate at the place where cholesterol’s rigid steroid ring structure is located but increases it in the central part of the membrane where the bulky cyclic backbone of cholesterol cannot reach 31,33. Such observations were made possible by using the very small (and hydrophobic) probe of molecular oxygen in these measurements. Additionally, oxygen collision rates or the oxygen transport parameter (OTP) could be obtained in coexisting domains without the need for their separation 34,35,36,37. We employed this approach in the present investigation. The profiles of oxygen collision rates across the membrane were obtained, which provide useful information on the three-dimensional dynamic structure of the liquid-ordered domain 31,33,34,35,38,39,40,41.
As the paradigm for the present study, we employed one of the simplest model membranes that contains the liquid-ordered phase: a binary mixture of l-α-dimyristoylphosphatidylcholine and cholesterol. The phase diagram and lipid motion have been well characterized 15,42,43,44,45. The phase diagram based on Almeida et al. 45 is schematically shown in Fig. 2 and is used as a guideline for the presentation of our data.
DMPC, cholesterol, and phospholipid spin labels were obtained from Avanti Polar Lipids (Alabaster, AL). Doxylstearic acid spin labels were purchased from Molecular Probes (Eugene, OR).
The membranes used in this work were multilameller dispersions of DMPC containing 1mol % spin labels (n-PC), T-PC, or n-SASL, and various amounts of cholesterol from 0 to 50mol %, which we call the bulk cholesterol mole fraction. The membranes were prepared by the following method 44: chloroform solutions of DMPC and n-PC or n-SASL and cholesterol were mixed (containing 0.5×10−5mol of total lipids), the chloroform was evaporated with a stream of nitrogen gas, and the lipid film on the bottom of the test tube was thoroughly dried under reduced pressure (∼0.1mm Hg) for 12h. A buffer solution (0.2ml of 10mM PIPES and 150mM NaCl, pH 7.0) was added to the dried lipids at 40°C and vigorously mixed on a vortex. The buffer used for the study samples with n-SASLs was 0.1M borate at pH 9.5. A rather high pH was chosen in this case to ensure that all SASL probe carboxyl groups were ionized in the DMPC membranes 46,47,48.
The DMPC or DMPC/cholesterol membranes were centrifuged briefly, and the loose pellet (∼20% lipid, w/w) was used for the EPR measurements. The sample was placed in a capillary (0.6mm i.d.) made of a gas-permeable polymer, TPX 49,50. For measurements of OTP, concentration of oxygen in the sample was controlled by equilibration with the same gas used for the temperature control, i.e., a controlled mixture of nitrogen and dry air adjusted with flowmeters (Matheson Gas Products model 7631H-604) 38,49,50. In all EPR measurements, the temperature was monitored using a copper-constantan thermocouple placed in the sample just above the active volume of the resonator.
The T1s of the spin labels were determined by analyzing the saturation recovery signal of the central line obtained by short-pulse saturation recovery EPR at X-band with the use of a loop-gap resonator 26,27,33,51. The saturation-recovery spectrometer was described previously 27,51. See also a recent review on saturation recovery by Hyde 52. The microwave field for short pulse experiments was 2.0G (1 G=10−4T), and the pulse length was 0.3μs. To avoid artificial shortening in T1 measurement, a relatively low level of observing power (8μW, with the loop-gap resonator delivering an H1 field of 3.6×10−5G) was used for all experiments. Typically 105–106 decays were acquired with 2048 data points on each decay. Sampling intervals were 2, 4, 8, 16, or 32ns depending on sample, temperature, and oxygen tension. The total accumulation time was typically 2–5min. Saturation-recovery curves were fitted by single or double exponential functions. When the single exponential fit was satisfactory, the decay time constant could be evaluated with a standard deviation smaller than ±5% from the mean value for independent experiments (for samples prepared independently). When the double exponential fit was necessary and satisfactory, the decay times were usually evaluated with standard deviations less than ±5% and ±30% for the longer and shorter recovery time constants, respectively (for independent samples and EPR measurements, these were the worst values in the measurements reported for this article). The large standard deviation for the shorter component resulted from the difficulty in measuring very short T1s caused by the presence of molecular oxygen in the present setting of the instrument. In Figure 4 and Figure 5 and Figure 6, we only indicated maximal errors.
The conventional EPR spectrum was routinely recorded for each sample, equilibrated with nitrogen gas. Remarkably, these conventional EPR spectra exhibited no clearly visible conventional features for the presence of two components, although Chiang et al. 53 and Swamy et al. 54 successfully carried out a nonlinear least-squares analysis of conventional EPR spectra, found the coexisting liquid-ordered and liquid-disordered domains in model membranes made from ternary lipid mixtures, and evaluated order parameters and reorientational diffusion coefficients in both of the coexisting domains. Their method is sensitive to the dynamic processes occurring in the time scale up to ∼100ns, whereas our method, which is based on spin-label T1s, has a time window of 0.1–100μs. Our present work is consistent with our earlier conventional EPR studies of PC/cholesterol membranes 44, suggesting that, without special analysis, the features of two coexisting domains cannot be evaluated separately. It further demonstrates that the DOT method is an excellent way of clearly discriminating and characterizing two coexisting domains (phases) in these lipid bilayers.
The effect of oxygen on the spin-lattice relaxation of spin labels is generally much greater than the motional effects 38. Thus, OTP, W(x), was introduced as a convenient quantitative measure of the rate of the collision between the spin probe and molecular oxygen by Kusumi et al. 38 as:
![]() | (1) |
![]() | (2) |
When the liquid-ordered and disordered domains are located in two different membrane domains, the spin label alone most often cannot differentiate between these domains, giving nearly indistinguishable conventional EPR spectra and similar T1 values. However, even small differences in the lipid packing of these domains will affect oxygen partitioning and oxygen diffusion, which can be easily detected by observing the different T1s from spin labels in these two locations in the presence of oxygen. In membranes equilibrated with air and consisting of two lipid environments with different oxygen transport rates, a fast oxygen transport (FOT) domain and a slow oxygen transport (SLOT) domain, the saturation-recovery signal is a simple double-exponential curve with time constants of
(Air, FOT) and
(Air, SLOT) 34,35.
![]() | (3) |
![]() | (4) |
Chemical structures of the spin labels used in this study, together with their approximate depth locations in the DMPC/cholesterol bilayer, are illustrated in Fig. 1. The majority of observations were carried out at 25°C and 20°C. As shown by broken lines in the phase diagram in Fig. 2, these temperatures are close to a phase boundary when the bulk cholesterol mole fraction is below 30mol %, and the domain behaviors at these temperatures are interesting. All T1 values were determined by analyzing the saturation-recovery signals for samples equilibrated with different partial pressures of oxygen.
Fig. 3 shows representative saturation recovery curves of 5-PC. In the bilayers containing 0 or 50mol % cholesterol (A and B, both at 25°C), the saturation recovery signals were satisfactorily fit to a single exponential function in both the absence and presence of molecular oxygen (in nitrogen and 50% air, respectively; see the plots of residuals). In contrast, for the bulk cholesterol mole fraction of 15mol % (C, D, and E observed at 25°C; F, G, and H observed at 20°C), the saturation recovery curves in the presence of molecular oxygen can be fit successfully only with double exponential curves (compare the residual in D (G) with that in E (H)), whereas single-exponential fit was satisfactory in the absence of molecular oxygen (for a sample equilibrated with nitrogen). These results are consistent with the presence of two phases under these conditions in the phase diagram shown in Fig. 2: the DMPC bilayer with an overall cholesterol content of 15mol % contains lo (liquid-ordered phase) and ld (liquid-disordered phase) at 25°C, and lo (liquid-ordered phase) and so (gel phase) at 20°C. Namely, although saturation recovery signal in the absence of molecular oxygen cannot differentiate the two phases, in the presence of oxygen, the recovery curves are very different between the two phases. This indicates that the collision rate of molecular oxygen, or OTP, is quite different in these two domains, consistent with the results by Ashikawa et al. 34. Likewise, the single-exponential recovery in A and B (0 and 50mol % cholesterol, respectively) observed at 25°C is also consistent with the phase diagram in Fig. 2, indicating the presence of a single phase under these conditions.
In Fig. 4,
values estimated for 5-PC in bilayers with an overall cholesterol content of 0, 15, and 50mol % cholesterol at 25°C are plotted as a function of oxygen concentration (as percentage air in the air-nitrogen mixture) in the equilibrating gas mixture. All of the plots exhibited a linear dependence on percentage air. In fact, all of the
plots for all of the spin probes used in this work at both 20°C and 25°C showed linear dependences on the oxygen concentration between 0 and 50% air. This did not happen in the influenza envelope membrane, representing a fast exchange of the probes between the two domains (the domains enriched in both hemagglutinin and cholesterol and the bulk domain) or rapid continual formation and disintegration of the protein-cholesterol-rich domains 35. Therefore, the linear dependence of
on oxygen concentration in these plots indicates that the exchange rate of spin-labeled lipids between the two coexisting domains is slow (<104s−1, the upper time window limit of the DOT method 35) or the lifetime of each domain is long (longer than 100μs), probably because both domains are large 34,35. Assuming the diffusion coefficient of spin probes to be 9μm2/s 58, over 100μs, they would cover an area of ∼60nm in radius (square root of 4×9μm2/s×100μs), suggesting that the domain size is at least 60nm in radius.
for 5-PC in various domains of DMPC/cholesterol membranes at 25°C, plotted as a function of the fraction of air in the equilibrating gas mixture. DMPC membranes with no cholesterol (×, ld phase), 15mol % overall cholesterol (solid circle, lo phase; open circle, ld phase), and 50mol % overall cholesterol (open triangle, lo phase). The error bars represent the maximal deviations (see the Saturation recovery EPR subsection in the Materials and Methods section).W(x), the OTP, can be obtained by extrapolating the linear plot to the sample equilibrated with the atmospheric air (see Eq. (1) and Kusumi et al. 38; this process was required because the accurate observation of saturation recovery becomes increasingly difficult as the oxygen partial pressure is increased as a result of faster recoveries). To assign the two OTPs to the two phases in the phase diagram, we assumed that the OTP in the liquid-ordered domain was greater than that for the gel phase and smaller than that for the liquid-disordered phase 59. (Because the preexponential factors in the fitting of the recovery curves are not robust parameters, we were unable to correlate the apparent populations of fast- and slow-recovering components to the populations of the two phases.)
An unexpected finding is that the oxygen collision rate at the 5-PC position is greater in the ld-phase domains that exist in the membrane with an overall cholesterol content of 15mol % (from the phase diagram in Fig. 2, this domain actually contains ∼5mol % cholesterol) than that in the ld-phase domains (the entire membrane) of the pure DMPC bilayer. We return to this point later in this article.
In Fig. 5, OTP obtained with 5-PC and 14-PC in DMPC membranes containing three different bulk cholesterol mole fractions (0, 15, and 50mol %) is plotted as a function of temperature, indicating single (for 0mol % cholesterol, Figure 5AD, and 50mol % cholesterol, Figure 5CF) and double (for 15mol % cholesterol, with the exception of data at 45°C where single exponential fit was obtained indicating the presence of only the FOT component, Figure 5BE) exponential fits. These data indicate that for both locations the lipid environment is homogeneous in terms of oxygen transport in the 0.1- to 100-μs range for pure DMPC (so phase below and ld phase above the phase transition temperature) and in the presence of 50mol % cholesterol (lo phase below and above the phase transition temperature). DMPC membranes with a bulk cholesterol mole fraction of 15mol % exhibit two domains with different oxygen transport rates. Below the phase transition temperature, we attributed these domains to the lo phase and so phase, and above the phase transition temperature to the lo phase and ld phase. However, at 45°C only one phase was found, which we attributed to the ld phase based on the phase diagram (Fig. 2) and dependences shown in Figure 5BE. The abrupt change of the OTP observed in the absence of cholesterol at the main phase transition temperature (Figure 5AD) is abolished by the presence of 50mol % cholesterol for both locations, close to the membrane surface (5-PC) and in the membrane center (14-PC). It is worth noticing that at 50mol % cholesterol, the OTP at 5-PC position (and wide temperature region below and above the phase transition) is close to that in the pure DMPC gel-phase membrane. Similarly, at 50mol % cholesterol, the OTP at 14-PC position is practically the same as that in the pure fluid-phase DMPC membrane in a broad temperature range.
At a bulk cholesterol mole fraction of 15mol %, where two coexisting domains are present, the picture is complex (Figure 5BE). With a rise in temperature, at the main phase transition temperature, the SLOT component disappears, and an FOT component appears, whereas the oxygen-transport parameter of the other component changes gradually and continuously across the main phase transition temperature. This was observed with both 5- and 14-PC. Based on the phase diagram shown in Fig. 2, this result suggests that the so domain with low OTP present below the phase transition temperature is converted to the ld domain with high OTP, whereas the lo domain is rather stable, giving the OTP in the lo domain gradual changes, even across the main phase transition temperature of DMPC. Such phase behavior (so turns into ld, whereas lo changes gradually across the DMPC phase transition temperature) was expected, particularly because the related phase boundaries are almost vertical. To the best of our knowledge, this was the first time that such changes have been directly observed.
In addition, Fig. 5 shows an important feature of the ld domain that contains small amounts of cholesterol (∼5mol %). Its OTPs with both 5- and 14-PC are greater than those in the ld domain containing no cholesterol. This tendency is stronger with 14-PC, i.e., in the middle of the bilayer. We return to this point in our discussion of Figure 6 and Figure 7.
In Fig. 6, the OTPs measured at 20°C and 25°C using 5-PC (near the membrane surface) and 14-PC (near the central part of the membrane) are plotted as a function of the overall cholesterol content. The results shown in Fig. 6 indicate a large scattering of points for the OTP in the ld domain, in particular that containing cholesterol, which is probably a result of very short T1s measured in the ld domain in the presence of oxygen. Further evaluation of the error is given in the Materials and Methods section. According to the phase diagram shown in Fig. 2, the variations of the overall cholesterol content between ∼5 and ∼27mol % will affect the fractions of lo and so (20°C, each phase contains constant mole fractions of 27% and 5% cholesterol, respectively) and lo and ld (25°C, each phase again contains constant mole fractions of 27% and 5% cholesterol, respectively), whereas in overall cholesterol mole fractions between 0 and ∼5%, the phases remain so (20°C) and ld (25°C) (in both phases, the cholesterol mole fraction is the same as the experimental mixing ratio), and in those between 30% and 50%, the phase remains lo at both temperatures (at both temperatures, the cholesterol mole fraction is the same as the experimental mixing ratio). The major interest here is whether lo domains show different characteristics in terms of the oxygen collision rate when they are in equilibrium with the ld or so phase.
At a bulk cholesterol mole fraction between 30 and 50mol %, the OTP is slightly greater at 25°C than at 20°C, suggesting a small temperature-dependent increase of the OTP in the lo phase when the temperature is raised from 20°C to 25°C. At the bulk cholesterol mole fraction of 10%, ∼23% of cholesterol is in the lo phase (both at 20°C and 25°C) and 77% in the so and ld phases (at 20°C and 25°C, respectively); here, 5-PC indicated that the OTP in the lo phase is greater when it is surrounded by the ld phase than by the so phase—to an extent greater than expected from the temperature-dependent changes. This was also observed for lower bulk cholesterol mole fractions and in a less marked way with 14-PC located in the middle of the membrane. This influence of the surrounding domain (ld or so phases) may be caused either by the bulk effect of the surrounding domain (with different oxygen concentrations) or by the different properties of the domain boundaries. In either case, data suggest that the lo domain is small.
To evaluate the upper limit of the lo domain size, let us assume that the influence of adjacent domains in a different phase can be detected when one-third of the lo domain area is under the influence of the adjacent domains (or the boundary region is greater than one-third of the lo domain size). Assuming that the diffusion coefficient of molecular oxygen in the lo domain is ∼300μm2/s (three times less than that in the bulk DMPC domain; for the evaluation of the oxygen diffusion coefficient in the DMPC bilayer at 25°C, see Windrem and Plachy 55 and Subczynski and Hyde 60,61) during the spin-lattice relaxation time of 10μs, molecular oxygen would cover an area of 135nm in radius (oxygen diffusion is three-dimensional diffusion). This leads to a simplistic equation of (a+135)2/a2=1.3, giving a ≈ 960nm. Hence, the upper estimate of the lo domain radius is ∼1000nm.
The cholesterol content of the lo phase in the membrane containing the overall cholesterol concentration between 5 and 20mol % is nearly constant (∼27mol %) both at 20°C and 25°C, as depicted in the phase diagram in Fig. 2, and we anticipate that the OTP for the lo domain in this overall cholesterol concentration range is comparable to that for 30mol % cholesterol. However, there is a slight dependence of the OTP for the lo domain on the overall cholesterol concentration in the range of 5–20mol % for both 5-PC and 14-PC at both temperatures. This suggests that, in this cholesterol range, not only do changes of the relative amounts of lo and ld (or so) phases take place, but also the size of the individual lo-phase domain increases, reducing the effects of surrounding ld or so phases.
How can we reconcile the domain size evaluated in the present research (the lower limit of 60nm and the upper limit of 1000nm) and those found in fluorescent microscopy, which reports the size of micrometer to several 10s of micrometers 62,63,64,65,66,67,68,69? First, because giant unilamellar liposomes cannot be formed with the present binary mixture of DMPC and cholesterol, the lo domain size of this mixture may be much smaller than those sizes found in mixtures used in the fluorescence microscopy research. Second, in the research using giant unilamellar vesicles, there generally exist many smaller liposomes that were not used for the observation, and these smaller liposomes must have much smaller lo domains. Third, the large lo domains observed under the fluorescence microscope may be clusters of these smaller lo domains that were in fact separated by small or thin ld- or so-phase domains but that could not be detected because of the lack of spatial resolution (∼300nm). In fact, to the best of our knowledge, no evaluation of the lipid composition in the apparent lo domain in the giant unilamellar liposome being observed under the fluorescence microscope exists in the literature (e.g., using time-of-flight mass spectroscopy combined with microscopic laser evaporation).
At the present time, we are unable to determine which of these possibilities may be correct, but the results obtained here illustrate the necessity to be cautious about the lo domain size determined in artificial membranes using optical microscopy. In the raft literature, it is often assumed that, whereas the lo domains of a size as large as 1–10μm are found in artificial membranes, such an lo-like domain cannot be seen in the cellular plasma membrane before the cells are stimulated extracellularly or queued intracellularly. Furthermore, an argument has been advanced that the absence of such domains in the plasma membrane may be a result of the complexity in the molecular compositions and the presence of membrane molecules that have detergent-like surface activity, making the raft smaller than the optical resolution of the microscope. However, our results suggest the possibility that even in artificial membranes, the true lo domain size may be comparable to the optical diffraction limit or even smaller.
Transmembrane OTP profiles across the lo-, ld-, and so-phase domains in DMPC/cholesterol bilayers were obtained at 25°C and 20°C using nine lipid spin labels as shown in Fig. 1 and are displayed in Fig. 7 (A, without cholesterol; B, 15mol % overall cholesterol; C, 50mol % overall cholesterol). Lipid compositions and temperatures for which these profiles were obtained are indicated as solid diamonds in the phase diagram depicted in Fig. 2. The profiles in Figure 7A are those for ld- and so-phase domains that contain no cholesterol. It is somewhat surprising that OTPs of these domains differ only by a factor of two to four at all depths.
Profiles in the lo domains in different surroundings were obtained in the three distinct regions in the phase diagram (solid keys in Figure 7BC): 1), the lo domain that coexists with the ld domain (27mol % cholesterol in the domain for 15mol % overall cholesterol at 25°C; Figure 7B); 2), the lo domain that coexists with the so domain (27mol % cholesterol in the domain for 15mol % overall cholesterol at 20°C; Figure 7B); and 3), the lo phase that constitutes the whole membrane (50mol % overall cholesterol at 25°C and 20°C; both are within the same phase region; Figure 7C). At 15mol % overall cholesterol at both temperatures (25°C and 20°C, Figure 7B), both ld and so domains contain 5mol % cholesterol, whereas lo domains contain 27mol % cholesterol. In this cholesterol concentration range, the overall shape of the OTP profiles across the membrane remains the same, although actual values greatly vary in different domains. The profiles for the lo domains lie between those of ld and so domains, as expected.
However, we were amazed to find that the profile for the lo domain, containing 27mol % cholesterol (Figure 7B), is not so much different (only 20–40%) from that for the ld domain, which does not contain any cholesterol (Figure 7A; both observed at 25°C). Further increase in the overall cholesterol content to 50mol %, which makes the whole membrane an lo phase, induced a dramatic change of the OTP profile, both at 25°C and 20°C (Figure 7C). It decreased the OTP close to the membrane surface and increased it in the membrane center, resulting in a sharp three- to fourfold change in the OTP between the C-9 and C-10 positions, making the profile almost rectangular. The overall change of the OTP across the membrane is as large as a factor of ∼15: values of the OTP at depths close to the membrane surface become as low as those observed in the so domain, and those in the membrane center as high as those observed for the ld domain in the absence of cholesterol. The abrupt increase of OTP occurs at the depth to which the rigid tetracyclic cholesterol structure is immersed 31,33,68,69,70,71.
These results suggest that the liquid-ordered domain made of saturated phospholipids and cholesterol may be ordered only near the membrane surface, retaining high disorder in the middle of the membrane. This property may help the lo domain to retain high lateral mobility of incorporated molecules within the domain. To explain the OTP profiles in the lo-phase domains, consider cholesterol localization in the lipid bilayer membrane. The rigid plate-like tetracyclic ring structure of cholesterol reaches the depth of C-7 to C-10 in the lipid bilayer, and the cholesterol isooctyl chain with the cross section much smaller than that of the rigid ring is located in the membrane center 70. This would produce free volume in the membrane center, where gauche-trans conformational changes of the alkyl chains as well as oxygen transport may be enhanced. For further discussion, refer to our previous articles 31,33,71. Interestingly, the hydrophobicity profile across the DMPC/cholesterol (50/50mol fraction) membrane exhibited an abrupt increase in hydrophobicity between the C-9 and C-10 positions toward the membrane center 71.
In addition, comparison of the OTP in the ld domain that contains no cholesterol (upper graph in Figure 7A) with that in the ld domain containing 5mol % cholesterol (upper graph in Figure 7B) reveals that the OTP is much greater in the ld domain, which contains very small concentrations (5mol %) of cholesterol throughout all membrane depths (upper graph in Figure 7B: this result was also apparent in the data shown in Figure 4 and Figure 5 and Figure 6). This is surprising not only because it is contrary to the general view that cholesterol increases the alkyl chain order and suppresses the molecular motion but also because such a small concentration of cholesterol induced such large increases (up to ∼60%, which occurs in the bilayer central region) in the OTP. However, we previously showed that small amounts of cholesterol (<5mol %) increase the alkyl chain mobility (gauche-trans isomerization) in the ld phase (see Fig. 3 in Subczynski and Kusumi 72). There, a strong rigidifying effect of cholesterol was observed only for cholesterol concentrations above 5mol %. This enhanced mobility of 5-SASL and the OTP in the presence of very small amounts of cholesterol may be caused by the cholesterol’s impurity effect to destroy the cooperative dynamic characteristics by forming the membrane of a single molecular species, which is particularly apparent in the middle of the bilayer because cholesterol induces vacant space there.
Another apparent contradiction to the common belief of cholesterol’s “ordering or rigidifying effect” is found in the middle of the lo-phase bilayer in the presence of 50mol % cholesterol (Figure 7C). The OTP values in the positions C-12, C-14, and C-16 are greater than those in the lo-phase domain containing 27mol % cholesterol (second graph from the top in Figure 7B) or even those in the ld-phase bilayer without cholesterol (top graph in Figure 7A). Again, this is probably because there is more free volume in the central part of the bilayer created by the presence of cholesterol, which is much bulkier in the planar tetracyclic ring structure than its alkyl chain part 31,33. Because molecular oxygen is a very small probe, the OTP is likely to be a very sensitive monitor for the creation of such small and dynamic free space in the central part of the bilayer.
Liquid-ordered domains present in the liquid-disordered membrane appear to be made of two matched lo domains in both leaflets of the bilayer 6,65,67,73. Generally, fluorescence microscopy observations of the bilayers containing these domains have reported the presence of two clearly separated domains, lo and ld domains, and not the presence of regions where the lo domain in one leaflet overlaps with the ld domain in the other leaflet. These results suggest that to coexist stably with the ld domain, the lo domain tends to be stabilized in some way by matching the ordered domains in both leaflets and enhancing the coupling of the two layers through interdigitated lipids 1,6,9,74. Thus, we assume that the obtained profiles reflect the bilayer property rather than the property of the lo domain in each leaflet.
The phase diagrams available for the binary mixtures of DMPC and cholesterol indicate the regions of the lipid composition and temperature in which different phases coexist 15,42,43,44,45. The present research was undertaken to characterize the physical properties of the lo-phase domain under the conditions where two phases coexist. Previously, such characterization has mostly been limited to the membranes that solely consist of a single phase 75,76,77,78,79,80. We found that the commonly accepted statement that the properties of the liquid-ordered-phase domains lie between those for the liquid-disordered and solid-ordered domains 59 is true for membranes containing bulk cholesterol mole fractions below 27% where the lo domain coexists with the ld or so domain. However, at higher cholesterol concentrations, the OTP in the lo domain is like that in the so domain near the membrane surface (from the surface to the depth of C-9) and like that in the ld domain in the central region of the membrane (at depths deeper than C-9).
Conventional EPR at X-band was used some time ago to indicate coexisting phases in the binary mixtures of phosphatidylcholine and cholesterol, giving evidence for the existence of the immiscible fluid phases (liquid-ordered and liquid-disordered) 42,43,44. More recently, high-frequency EPR was employed to study faster reorientational motion 75,81,82. In the present study, to gain more insight regarding the dynamics in the cholesterol-rich domains, a pulse EPR T1 method was used. Because it is more sensitive to membrane dynamics at longer time-space scales than other EPR and fluorescence techniques, it is thought to be suitable for the studies of the dynamics occurring in the liquid-ordered phase. Using the DOT method, which can cover the membrane dynamics in the range from 0.1 to 100μs, we carried out extensive characterizations of the three-dimensional structure of the lo domain, with special attention paid to the molecular dynamics and structures in the third dimension, namely, in the depth direction in the membrane.
The only measurement of the OTP in the raft domain in the biological membranes was that reported for the influenza virus membrane at the depth of carbon C-14 35. The OTP exhibited an extremely low value, 16 times lower than that observed in the surrounding bulk region or that observed in a lipid membrane made of the total lipid extract from the influenza virus. The major reason for such a low OTP in the raft domain in the influenza virus envelope membrane was proposed to be a very high concentration of cholesterol, of the order of 50mol %, coupled with high concentrations of transmembrane proteins, hemagglutinin, and neuraminidase.
Previously, we obtained the profiles of the OTP across the reconstituted membranes containing various concentrations of bacteriorhodopsin 34. At high bacteriorhodopsin/lipid ratios, a domain where the oxygen transport is very slow, the SLOT domain, was formed. In the SLOT domain, the profile of the OTP was almost flat at very low values, similar to that observed in the purple membrane. Meanwhile, in the liquid-crystalline (ld phase) 1-palmitoyl-2-oleoyl PC membrane containing model α-helical transmembrane peptides at a concentration of 10mol %, the OTP was decreased by 20–30% 41 throughout all depths in the membrane, making the OTP in the ld phase at 35°C very similar to that observed in the lo domain in the DMPC-cholesterol membrane containing 15mol % cholesterol at 25°C. These results indicate that the OTP profile across the membrane provides valuable information on the three-dimensional organization of membrane molecules in the microdomains in the membrane. Such knowledge has never been acquired by other methods and will be important for understanding the three-dimensional dynamic organizations of the membrane microdomains.
This work was supported by grants EY015526, EB002052, and EB001980 of the National Institutes of Health, and also by Grants-in-Aid for Scientific Research (General and on Priority Areas) from the Ministry of Education, Culture, Sport, Science, and Technology of Japan.
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