| Evanescent interference patterns for fluorescence microscopy Biophysical Journal, Volume 61, Issue 2, 1 February 1992, Pages 542-552 J.R. Abney, B.A. Scalettar and N.L. Thompson Abstract The increasing experimental use of total internal reflection/fluorescence photobleaching recovery has motivated a theoretical study of the spatial intensity profiles generated by two interfering evanescent waves. The interference patterns generated by evanescent waves differ considerably from those generated by plane waves in a homogenous medium because evanescent waves are not transverse and because the evanescent propagation number depends on the incidence angle of the totally internally reflected light. The periodicity and contrast of the evanescent interference patterns under various conditions are calculated; these parameters depend on the intensities, polarizations, and incidence angles of the two incident beams, as well as the refractive indices of the two media that form the planar interface where total internal reflection occurs. The derived intensity profiles are used to develop expressions for the shapes of fluorescence photobleaching recovery curves when evanescent interference patterns are used for fluorescence excitation and bleaching. The calculations also suggest that colliding beam experiments may confirm theoretically predicted evanescent field polarizations. Abstract | PDF (877 kb) |
| In Situ Fluorescent Protein Imaging with Metal Film-Enhanced Total Internal Reflection Microscopy Biophysical Journal, Volume 90, Issue 12, 15 June 2006, Pages 4662-4671 Thomas P. Burghardt, Jon E. Charlesworth, Miriam F. Halstead, James E. Tarara and Katalin Ajtai Abstract Fluorescence detection of single molecules provides a means to investigate protein dynamics minus ambiguities introduced by ensemble averages of unsynchronized protein movement or of protein movement mimicking a local symmetry. For proteins in a biological assembly, taking advantage of the single molecule approach could require single protein isolation from within a high protein concentration milieu. Myosin cross-bridges in a muscle fiber are proteins attaining concentrations of ∼120M, implying single myosin detection volume for this biological assembly is ∼1 attoL (10 L) provided that just 2% of the cross-bridges are fluorescently labeled. With total internal reflection microscopy (TIRM) an exponentially decaying electromagnetic field established on the surface of a glass-substrate/aqueous-sample interface defines a subdiffraction limit penetration depth into the sample that, when combined with confocal microscopy, permits image formation from ∼3 attoL volumes. Demonstrated here is a variation of TIRM incorporating a nanometer scale metal film into the substrate/glass interface. Comparison of TIRM images from rhodamine-labeled cross-bridges in muscle fibers contacting simultaneously the bare glass and metal-coated interface show the metal film noticeably reduces both background fluorescence and the depth into the sample from which fluorescence is detected. High contrast metal film-enhanced TIRM images allow secondary label visualization in the muscle fibers, facilitating elucidation of Z-disk structure. Reduction of both background fluorescence and detection depth will enhance TIRM’s usefulness for single molecule isolation within biological assemblies. Abstract | Full Text | PDF (322 kb) |
| Application of Surface Plasmon Coupled Emission to Study of Muscle Biophysical Journal, Volume 91, Issue 7, 1 October 2006, Pages 2626-2635 J. Borejdo, Z. Gryczynski, N. Calander, P. Muthu and I. Gryczynski Abstract Muscle contraction results from interactions between actin and myosin cross-bridges. Dynamics of this interaction may be quite different in contracting muscle than in vitro because of the molecular crowding. In addition, each cross-bridge of contracting muscle is in a different stage of its mechanochemical cycle, and so temporal measurements are time averages. To avoid complications related to crowding and averaging, it is necessary to follow time behavior of a single cross-bridge in muscle. To be able to do so, it is necessary to collect data from an extremely small volume (an attoliter, 10 liter). We report here on a novel microscopic application of surface plasmon-coupled emission (SPCE), which provides such a volume in a live sample. Muscle is fluorescently labeled and placed on a coverslip coated with a thin layer of noble metal. The laser beam is incident at a surface plasmon resonance (SPR) angle, at which it penetrates the metal layer and illuminates muscle by evanescent wave. The volume from which fluorescence emanates is a product of two near-field factors: the depth of evanescent wave excitation and a distance-dependent coupling of excited fluorophores to the surface plasmons. The fluorescence is quenched at the metal interface (up to ∼10nm), which further limits the thickness of the fluorescent volume to ∼50nm. The fluorescence is detected through a confocal aperture, which limits the lateral dimensions of the detection volume to ∼200nm. The resulting volume is ∼2×10 liter. The method is particularly sensitive to rotational motions because of the strong dependence of the plasmon coupling on the orientation of excited transition dipole. We show that by using a high-numerical-aperture objective (1.65) and high-refractive-index coverslips coated with gold, it is possible to follow rotational motion of 12 actin molecules in muscle with millisecond time resolution. Abstract | Full Text | PDF (419 kb) |
Copyright © 2007 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 93, Issue 10, 3434-3450, 15 November 2007
doi:10.1529/biophysj.107.109744
Biophysical Theory and Modeling
Ombeline de La Rochefoucauld*,
,
and Elizabeth S. Olson†
* Department of Otolaryngology, Head and Neck Surgery, Columbia University, New York, New York
† Department of Otolaryngology, Head and Neck Surgery and Biomedical Engineering, Columbia University, New York, New York
Address reprint requests to O. de La Rochefoucauld.The plunging motion of the stapes launches a traveling wave down the cochlea that peaks at frequency-dependent locations: low frequencies travel deep into the cochlea and peak in the apex, high frequencies peak in the base. The physical basis for the wave is the interaction between the mass of the cochlear fluid and the stiffness of the organ of Corti complex (OCC, the cellular tissue of the organ of Corti and the basilar and tectorial membranes on either side). The stiffness of the OCC is determined by its width, thickness, elasticity, and degree of longitudinal coupling. From base to apex, there is a decrease of OCC stiffness. The wave speed and therefore the wavelength (λ) decreases with decreasing stiffness. The reduced speed leads to growth of the wave due to conservation of energy; eventually, however, damping causes the response to plummet 1. Thus, the wavelength of the traveling wave will become shorter as the wave approaches and then passes the best-frequency (BF) place where it peaks (Figure 1A). The frequency tuning arises through the interaction of the cochlear fluid mass, the stiffness of the OCC, fluid and/or tissue viscosity, and possibly OCC mass. The anatomical OCC mass can be translated to height (mocc=ρh) if we assume that its density is approximately that of water (ρ=1g/cm3). From base to apex, the gerbil OCC height varies from 125μm to 200μm 2, therefore we expect the OCC mass to be ∼0.015g/cm2. However, because of its soft, liquid character, the OCC might be mechanically indistinguishable from the surrounding fluid, in which case the anatomical height would have diminished mechanical significance. The role of OCC mass in passive tuning is uncertain, and by studying the traveling wave pattern, we examine this role. Because active tuning is built upon a substrate of passive tuning, our conclusions will be important to cochlear mechanics in general.
In three-dimensional (3D) cochlear computer models, tuning can arise through the interaction of cochlear fluid mass and OCC stiffness without local mass, supporting the concept of nonresonant tuning. In their model, Steele and Taber 3,4 treated the cochlear partition as a plate of viscoelastic material, clamped at the sides. They referred to its mass as “BM mass”, the basilar membrane mass; they considered the soft cellular tissue of the organ of Corti to deform with fluid pressure as though the cells were mechanically equivalent to fluid. Therefore, only the BM mass was expected to behave mechanically as a solid body. They explicitly studied the effect of this BM mass on tuning, and found that it was of little influence unless its value was unrealistically large (50 times bigger than the mass due to BM height), and concluded that BM mass could and should be neglected. Siebert 5 in a two-dimensional model and Zwislocki 6 in a one-dimensional model similarly concluded that OCC mass could be excluded with no significant effect on the tuning. More recent models that include active cochlear mechanics 7,8 also exclude significant OCC mass (Lim and Steele used a mass of 0.0015g/cm2 at BF=10kHz for their chinchilla model, which corresponds to the BM height 9, and Wen used a mass of 0.003g/cm2 at BF=2kHz in her cat model).
However, other models 1,10 explicitly include mass and the concept of local resonance: the basic mechanism for passive tuning is similar to what was described above for the nonresonant tuning, with the wave slowing and growing as the stiffness decreases. The inclusion of OCC mass makes the OCC's effective-stiffness decrease with frequency and equal to zero at the resonant frequency of a given position. The wave (oscillating at the stimulus frequency) peaks at its best frequency place and stops at the resonance place. In reality, due to damping, the wave will not quite reach its resonant position. The influence of the local resonance is to enhance the slowing and growing of the wave. Lighthill 1 noted this was a case of critical-layer absorption characterized by three points:
Lighthill used this concept to explain the steep apical cutoff in amplitude and accompanying rapid phase variations of passive cochlear tuning as the point of resonance is approached. The resonant frequency of a given location, fr, depends on the local properties of the OCC (local stiffness, S, and mass, mocc):
. If the OCC mass is zero, the resonant frequency is infinite. Our methodology allows us to find the stiffness and the size of the OCC mass that is playing a role in the mechanics, and thus to calculate fr. If fr is less than twice the passive BF, we will say that the OCC mass is significant, and local resonance plays a substantial role in producing the tuning. A smaller mass (giving a resonant frequency larger than two times the BF) will be used to indicate that the tuning is not based on local resonance. The factor two is an arbitrary number, but our experimental results will illustrate that it is a reasonable choice for separation.
In summary, we are left with a class of models that argues that OCC mass is not important to tuning, and another class that argues that it is, through the mechanical effects of the wave approaching (while not reaching) the local resonance position. Despite the centrality of the issue, whether or not OCC mass is critical to cochlear tuning remains an open question of cochlear mechanics. We explore this question through quantitative analysis of the wavenumber, k. The wavenumber is the derivative of phase with distance. In a sinusoidal wave, k is proportional to the inverse wavelength, k=2π/λ. The slowing of the traveling wave is reflected in its decreasing wavelength (increasing k) (Figure 1A). Our goal is to observe k's variation with frequency, coupled to 3D cochlear modeling predictions, to determine whether or not the mechanical response relies upon the presence of significant OCC mass. If the response peak is produced by local resonance, the BF will be lower than, but fairly close to, the local resonant frequency (less than a factor of two), as indicated in the amplitude curves in Figure 1B (for now ignoring the dotted lines). Through the BF region, k will grow very rapidly with frequency, due to the pronounced slowing of the wave—this is apparent in the changing phase slope in Figure 1B. In contrast, if the response peak is not produced by resonance, k will not grow as steeply in the region of the BF as illustrated later in the article (Fig. 5).
Interferometric measurements were used to map the motion of the basilar membrane under pure tone stimulation in the basal region of the cochlea. The local wavenumber of the traveling wave was found experimentally by taking the difference in phase measured at two adjacent longitudinal positions (separated by distances of tens of micrometers) and dividing by the distance between the two points. The amplitude of cochlear tuning is known to vary greatly with cochlear condition and/or stimulus level via the action of the cochlear amplifier; in contrast, the phase is affected relatively little. Therefore, the cochlear traveling wave and the wavenumber that describes its local wavelength are properties of the passive mechanics. (Relatively small changes in phase related to cochlear nonlinearity do occur 11.) The observation that the phase is little affected by cochlear condition imposes strong constraints on cochlear models 10 and gives us an experimental advantage, as we can do measurements on cochleae that are passive or nearly passive (broad amplitude response at low sound pressure levels along with high compound action potential, i.e., CAP, thresholds) and still gather meaningful phase data. Our measured wavenumber was compared to theoretical results obtained from a 3D model developed by de Boer and van Bienema 12, and the following question was asked: Does the measured wavenumber look more like the model prediction with or without significant OCC mass?
The excitation of the cochlea by the stapes produces a dual-mode pressure response composed of a pressure difference across the organ of Corti summed with a compressive pressure (sound wave) 13,14. Due to the long wavelengths of sound compared to the cochlea, the compressive wave has almost no spatial variation, constant amplitude along the scalae, and because the compressibility of cochlear structures is high (like that of water), there is negligible motion response of the basilar membrane to the compressive pressure.
The compressive pressure is called a fast wave, because it responds in phase with the stapes, with essentially no delay (the speed of sound in water is ∼1500m/s). The pressure difference mode causes the flexible organ of Corti complex to respond elastically. This response launches the traveling wave. In addition to the traveling wave, the pressure difference is associated with nontraveling evanescent-waves in the region of the round and oval windows (or an unnatural window—for example, one drilled for observation 15). Like the compressive pressure, these are fast modes in that they are in phase with the stapes motion. Unlike the compressive pressure, they cause significant motion of cochlear fluids and tissues. The evanescent-waves diminish rapidly in space and are usually much smaller than the traveling wave, but in the region of the windows they can be substantial, and they are apparent in the data. Measuring at a fixed position with increasing frequency, there comes a point where both the amplitude and phase reach an evanescent-wave plateau. In the schematic of Figure 1B, this is indicated in the dotted lines that extend horizontally in the upper part of the figure (vertically in the lower), thus truncating the detection of the traveling wave response. The transition to a dominantly evanescent-wave response occurs at a frequency ∼1.4–2 times higher than the passive BF in our measurements. Because our analysis uses the phase variations of the traveling wave, it is restricted to frequencies below the plateau.
Measurements were performed in gerbils, 50–70g in mass. The care and use of animals were approved by the Institutional Animal Care and Use Committee of Columbia University. The animal was first sedated with ketamine (40mg/kg) and then deeply anesthetized with sodium pentobarbital (initial dose, 60mg/kg; supplemental doses, 10mg/kg when a toe pinch response was elicited) and overdosed with anesthetic at the end of the experiment. The body temperature was maintained at 37°C using an animal blanket. The animal head was firmly attached to a head holder using dental cement. In some cases the head holder was heated by running current through resistive wire wrapped around the head holder. Surgery was performed to expose the left cochlea. First, the pinna was removed. A tracheotomy was made to maintain a clear airway. A small plastic tube of similar diameter as the ear canal (EC) entrance was cemented to the ear canal to couple the speaker and the microphone. The bulla was widely opened to view the cochlea. For the very basal view of the BM, the round window membrane (RWM, which is very transparent) was kept intact whereas for a more apical view of the first turn, the round window opening was enlarged and a portion of the RWM removed. For the latter preparation a glass coverslip closed the opening (no seal was necessary). Its use helped to stabilize the level of liquid inside the cochlea.
Basilar membrane vibration upon sound stimulation was measured at different longitudinal positions along the membrane. Experiments were performed in vivo. The CAP response of the auditory nerve to tone pips was measured with an electrode at the round window after opening the bulla and again after several steps of the surgery. It was used to evaluate the hearing capability of the animal, and to identify damage due to the invasive surgery 16. The cochlear condition was compromised due to the relatively wide opening of the bulla and the enlarging of the round window, resulting in passive (linear) or nearly passive preparations (30–40dB increase in CAP thresholds in the frequency region of interest at the end of the surgery). The in vivo condition was nevertheless important to maintain the fluid level and passive cochlear condition over several hours of recording (usually, the surgery starts at 9 AM and the experiment ends at ∼8 PM).
A RadioShack speaker (Fort Worth, TX) connected to the ear canal of the gerbil was used to deliver pure tones of frequencies from 250Hz to 50kHz. A probe tube attached to a B&K microphone 17 (Brüel & Kjær, Naerum, Denmark) was inserted ∼1mm into the EC to perform the sound stimulus calibration. When analyzing the EC data, a probe tube correction was used. Basilar membrane vibrations were measured using a heterodyne laser interferometer coupled to a confocal microscope. The setup has been described previously 18,19. The laser has been changed to a 25mW semiconductor laser, with wavelength like that of the previous HeNe laser (638nm), but with a more powerful beam. The phase of the interferometric measurements was corrected for a 14μs demodulation delay, determined experimentally 20. The BM was viewed using either a 10 or 20× objective lens. The optical sectioning capability of our system allows us to measure BM vibrations without beads through the RWM. For the basal position, in which the BM was viewed through the RWM, the RWM is a potential source of competing signal. However, measurements performed at the same longitudinal position with first the BM and then the RWM in focus showed that independent measurements of each surface could be made 21,22. Measurements of stapes vibrations were also performed with the laser beam focused on the posterior crus.
We show results from two animals, for which the view was such that several longitudinal measurements could be made. Seven other animals showed similar results. Because of the linear nature of the preparations, we emphasize data collected at the relatively high stimulus level of 80dB SPL.
To determine whether the OCC mass plays a significant role in cochlear frequency selectivity, we compared measurements of the variation of wavenumber with frequency to modeling predictions with and without OCC mass. Below we motivate this analysis by reviewing the equations that govern the motion of the OCC and lead to the dispersion relation. The dispersion relation is the mathematical relationship between the local (at a particular longitudinal location) wavenumber, the frequency, the cochlear dimensions, and the local properties of the OCC—stiffness, mass, and resistance.
This work focuses on passive, linear cochlear mechanics and no active forces are considered. We consider responses to pure tone stimulation. The analysis models a cross section of the organ of Corti complex. The pressures adjacent to the OCC (PST in scala tympani and PSV in scala vestibuli) drive the motion of the fluid on either side of the OCC and the local pressure difference across the OCC, (PSV−PST), drives the motion of the OCC (see Fig. 6 in 23 for an illustration of the forces applied to the organ of Corti). In a symmetric cochlear model, pressures and motions can be separated into symmetric and antisymmetric modes 14. The symmetric mode, in which the pressures in the scalae tympani and vestibuli are equal, is the compressive fast pressure wave. As noted in the Introduction, this does not drive significant OCC motion and we do not consider it further. In the antisymmetric mode, the pressures and the fluid disturbances above and below the OCC are equal in magnitude but opposite in sign, i.e., PST=−PSV. This simplifies the problem to that of a single fluid chamber with a flexible membrane (the OCC) forming one boundary. Almost all cochlear models use this approximation, including the one on which we base our theoretical comparison. The antisymmetric mode actually comprises several modes, both traveling (slow wave) and nontraveling (evanescent-fast wave), as introduced above. While many models are simplified to exclude the evanescent modes, others 3,24 have noted that these modes are necessary to match the boundary conditions in the region of the windows. Our quantitative analysis below only includes the traveling wave, but the evanescent-fast wave influences our results, as will be discussed further below.
The OCC mechanics are described by
![]() | (1) |
PST is the pressure just at the boundary of the BM that drives the motion of the adjacent fluid in scala tympani. Approximating the fluid forces as linear and inviscid 27, we can write
![]() | (2) |
From Eqs. (1) we have the following relation at the boundary of the BM
:
![]() | (3) |
Several authors have noted that 3D treatments are necessary for detailed comparison to experimental results 1,3,10. Therefore, to compare with accuracy our experimental results to predictions, we will only consider a 3D model.
To find the dispersion relation, we need to express mfluid in terms of the wavenumber. For this, we use the 3D model developed by de Boer 28. The model has the form of a rectangular box. The structure contains two symmetric scalae (h=height, b=width, and they are taken to be equal, h=b). The OCC occupies a fraction (ɛ) of the width of the scala. The structure is considered to be infinitely long. The scalae are filled with an inviscid, linear, and incompressible fluid. The OCC is assumed to move linearly and to be described completely by its specific acoustic impedance, Zocc. In view of the linearity and pure tone stimulation, the system response varies with time as eiωt. The boundary conditions are 1), at the outer walls, the normal component of the fluid velocity is zero; 2), the cochlear windows are driven by an equal and opposite velocity; 3), the pressure goes to zero at longitudinal locations away from the peak; and 4), the boundary condition at both radial edges of the BM are hinged, meaning the second spatial derivative is zero there.
Details about how to find the analytic expression for Q are in de Boer 28; here we simply give the result:
![]() | (4) |
![]() | (5) |
The dispersion relation is obtained by inserting Q3D(k)=heq=mfluid/2ρ from Eq. (5) into Eq. (3):
![]() | (6) |
We checked the validity of our experimental/theoretical comparison by programming a two-dimensional (2D) cochlear computer model 5. Using this model we compared the experimental wavenumber kexp (as calculated from the difference in velocity phase at two adjacent longitudinal locations, divided by the distance between these locations) with the model's actual k2D values (k2D=−2iωρ/Zocc; see Appendix B ). In this test case a departure between the experimental and theoretical k values did appear, but only for a very large value of OCC resistance. The departure arose because with the inclusion of OCC resistance, the OCC impedance has both real and imaginary parts, resulting in a frequency-dependent phase-shift of velocity that appeared in the experimental kexp but not in the theoretical k2D. This introduces a small additional (<90°) frequency-dependent phase variation.
In Eq. (6), the parameters corresponding to the geometry of the gerbil cochlea at our one turn measurement position (∼2mm away from the round window) were determined using Plassmann et al. 30. The dimensions of the scalae were estimated as follows: the height was taken equal to the width of each scala (h=b=550μm), and the BM occupied a fraction ɛ=0.3 of the total width, which corresponds to a BM width of 165μm, to model the basal BM. The value ρ is the fluid density, taken as that of water, 1 g/cm3. The parameter
was chosen for the best correspondence between the analytical expression for Q3D(k) in Eq. (4) and its approximation in Eq. (5): b0=1.2. The match is shown in Fig. 2, and one- and two-dimensional approximations for Q (as derived in Appendix B ) are included for comparison. Finally, the only free parameters were the components of
(x): stiffness (S), mass (mocc), and damping (R). Stiffness and mass can be recast as resonant frequency,
![]() |
and a 2D model, Q2D=1/k (short-wave approximation) are included for comparison.Results from two experiments are presented and compared to theoretical results. These are in vivo passive-cochlea measurements, at a stimulus level of 80dB SPL.
Fig. 3 illustrates the BM velocity at a basal region characterized by a passive BF of 35–40kHz viewed through the intact RWM. Vibrations of the bony round window opening were measured and defined our background level (∼−60dB re 1mm/s at all frequencies). As we moved the measurement location from more basal to more apical (R#24 to R#27), the BM velocity amplitude peaked at lower frequencies and the phase shifted so that the rapidly downward sloping part started at lower frequencies. The observed shift in BF is as expected for the 315μm longitudinal distance between R#27 and R#24, based on the gerbil cochlear map 31. The longitudinal distance between measurement positions was found as
where the coordinates at each position were read from our linear positioning system. (Note that the plane of the BM was not perpendicular to our viewing/measuring axis; there is a substantial change in z coordinate as well as x and y coordinates between points, reported in the figure caption. Thus, we measured the BM velocity with a significant angle relative to the axis that is perpendicular to the plane of the BM. This is not expected to influence the phase measurement that is our emphasis.) The four amplitude and phase responses show differences over the range 25–50kHz but overlap at low frequencies. This behavior was also observed by others 32,33.
The total recording time for this experiment was 6h. The preparation needed to be stable in time to make the analysis meaningful. Fig. 4 shows the responses measured at the same position on the BM, but at different times: R#20 was measured 35min after and R#25 was measured 65min after R#14. Recording positions (x, y, and z) were adjusted to maximize the carrier level (signal proportional to the amount of light that reached the photodetector) at a position very close to the reference point (R#14), and actually differed from it by 11 and 19μm. Amplitude responses for the three curves were similar and the phase responses overlapped precisely.
The wavenumber was found by taking the difference in the phase (in radians) of two closely spaced locations and dividing by the longitudinal distance between these locations, kexp=Δφ/d. kexp is the wavenumber midway between the two measurement positions. (Note that this definition of kexp is valid only at frequencies where the traveling wave is dominant, as will be discussed further below.) Fig. 5 compares experimental variation of the wavenumber as a function of stimulus frequency obtained using R#24 and 25 (line with dots) to theoretical ones obtained by solving Eq. (6) for k. The influence of the parameters of the model (OCC mass, stiffness, and resistance) on k is studied.
Figure 5A shows the variation of kexp. As expected, kexp increased as the frequency approached the best frequency, BF ∼38kHz (i.e., as the wave approached the best place). The variations of kexp are noisy below 5kHz; the phase responses of both runs are similar and not smooth (but above the noise floor), therefore small differences in phase are enhanced. With the 10× objective lens used during this experiment a relatively high carrier level was obtained over a distance of ±10μm along the z axis from the position where the carrier level was maximum. Because the z-position of one measurement point is chosen by the maximum carrier level in combination with an in-focus view, a spread in z-positioning of ±10μm can occur and introduces uncertainty into the measured d. The error bars in Figure 5A illustrate how the uncertainty in separation distance affects kexp. The influence is small enough that it will not affect our conclusions.
In Figure 5B, the OCC impedance was considered as a stiffness with and then without OCC mass. Including OCC mass changed the shape of the curve. When the OCC was a pure stiffness, k was slightly bigger than kexp below 38kHz and was much too small at high frequencies (dotted line). Attempting to fit the data with a smaller stiffness value (without mass), the too-big/too-small frequency transition shifts up in frequency (dashed line), and the fit in the lower frequency region is not at all close. To model the slow growth in k at low frequencies followed by rapid growth at high frequencies (above BF, indicated by the asterisk), including substantial OCC mass was necessary (solid line).
Adding resistance did not influence k unless the OCC resistance was so big that its impedance rivaled the impedance of the effective stiffness S′=S−ω2mocc (Figure 5C). The effect of resistance was to reduce k; therefore including resistance emphasized the need for mass to explain the experimental data. For example, with R=1500g/s cm2, we needed a bigger mass (0.05 instead of 0.025g/cm2), a smaller resonant frequency (47 instead of 53kHz) resulting in a bigger stiffness (4.36 instead of 2.77 109dyn/cm3) to fit the experimental data. This value for the resonant frequency was not realistic, as then the wave would not exist at frequencies above 47kHz, which was not the case; in Fig. 3, amplitude and phase responses of R#24 and 25 remained in a traveling wave mode above 47kHz. Here the resistance is taken constant with frequency. This is a rough approximation, as R has been measured and showed a decrease followed by an increase with frequency 13,34. Because the effect of resistance on k is small compared to the dramatic effect of mass, and to reduce the parameter space, we do not consider resistance further.
Figure 5D explores the sensitivity of the theoretical curves to changes in stiffness and mass parameters. All the curves in this figure were obtained with the stiffness, S=(2πfr)2mocc, calculated with R=0, a fixed resonant frequency of 53kHz (same as Figure 5B), and a varying mass (0.015, 0.025, and 0.035g/cm2). With lower S and mocc, k was bigger. This is easily understood: because fr is fixed, and R=0, all the curves must approach the vertical at 53kHz. At frequencies much lower than fr, k is not much influenced by mocc, and is determined solely by the fluid (whose properties are fixed) and the stiffness. The smaller stiffness results in a slower wave, thus a shorter wavelength and a larger k. Even as fr is approached and mocc becomes influential this tendency remains.
Based on the experimental/theoretical comparisons in Figure 5BD, the resonant frequency for the location with passive BF of 38kHz was 53kHz, a factor of 1.4 greater than the BF. Thus, significant OCC mass was necessary to produce the pronounced increase in k slope—in other words, an approach to the local resonant frequency appears to influence the response substantially. It might be argued that up to the BF ∼38kHz, the theoretical k with and without OCC mass are very close and both fit the experimental k, and therefore that the OCC mass is not important to passive peaking. However, the behavior on the high frequency side of the peak is an important element of peaking. To make the point: if the high frequency side amplitude did not come down, there would be no peak. Therefore, the rapid increase in phase and k with frequency is linked to the high frequency side decrease in amplitude even in the passive case—as described by the theory of critical layer absorption.
Fig. 6 assembles curves of k(f) from three longitudinal locations along the basal turn of the BM. The relative position of each run is in the inset. Experimental (lines with symbols) curves are compared to the theoretical (thin lines) curves that provided the best fit. For these data, as in Fig. 5, best fits were obtained when significant OCC mass was included. Considering both parameters (mass and stiffness) as free, good fits were obtained with a decreasing stiffness (from 3.2 109 to 1.7 109dyn/cm3—factor of 1.88) and a decreasing mass (from 0.03 to 0.019/cm2—factor of 1.58) from the more basal to the more apical position. This decrease in mass was not expected, and the fitting was redone with the mass taken as constant (mocc=0.022g/cm2). The fits are still very good with the constrained mass value and stiffness values ranging from S=2.53 109 to 2 109dyn/cm3 (Fig. 6). With a smaller OCC mass (0.015g/cm2)—closer to what the anatomy predicts—the fits were less good but still reasonable.
The definition of the wavenumber kexp=Δφ/d is valid only over a frequency region where the traveling wave dominates. As soon as one of the phase responses reaches or approaches the plateau region, which likely signals that the BM is responding primarily to the evanescent-fast wave 1,35,36, kexp can no longer be calculated. That is why above a certain frequency—48kHz for kexp24,25, 46kHz for kexp25,15, and 43kHz for kexp15,27—the variation of the wavenumber changes its trajectory.
Results from another experiment (#8) are in Fig. 7. The view of the BM was of turn one, corresponding to a region where BF=20–25kHz. To access this region, the RWM was removed and the resulting opening was covered with a glass coverslip, which was simply positioned on the bony opening without sealing. BM vibrations were recorded over a total distance of 285μm along the longitudinal axis of the BM. Run #20 corresponds to a more basal, R#19 to a more apical position. The phase responses show the expected shift in frequency (Figure 7B). The shift in amplitude is small, likely due to the passive condition with a relatively broad response (Figure 7A). Background vibrations were measured with the laser beam focused on the bone around the oval window and were less than −60dB re 1mm/s at all frequencies. The repeatability of the measurements was checked by recording the same position with a 2h time separation. Figure 7C compares kexp (lines with symbols) to the theoretical k with (solid lines) and without (dashed lines) OCC mass. Best fits were obtained including a significant mocc of 0.015g/cm2 (and like above, constrained to be one value for the set). Going from the more basal to a more apical position within this series of measurements, there was a decrease in stiffness, from 5.2 108 to 3.9 108dyn/cm3 (factor of 1.34).
Results for two animals were presented in this section, but similar results (showing a need for significant OCC mass to fit the data) were obtained with seven other animals: one in the more basal region (Exp# 21: BF ∼38kHz, mocc=0.029g/cm2, and S=2.6 109dyn/cm3), four animals in the region BF ∼20–24kHz (Exp# 20-28-29-33: mocc=0.0056–0.0196g/cm2 and S=3.2–9.5 108dyn/cm3) and two in a region where BF∼16–18kHz (Exp# 17–30: mocc=0.004–0.0093g/cm2 and S=2–3.2 108dyn/cm3).
In this section, we will consider the different factors that can affect the experimental wavenumber and might influence our conclusions. First we will consider the effect of the distance between the two measurement locations (d), then the effect of the evanescent-fast wave on the slope of the phase response. Finally, we will extend the analysis to more data sets, including active preparations and more apical measurements.
The theoretical wavenumber is defined at a longitudinal location, and we approximate this wavenumber via measurements of phase at two flanking longitudinal locations. Based on the definition of the derivative, as the separation between locations becomes larger, the Δφ/d value becomes a less and less good approximation to the slope at the intermediate point. On the other hand, if the points are too close together, the difference between the phases is overly influenced by random experimental noise. It can be shown analytically that for phase changing more rapidly than quadratically with position, the increase in (absolute value of) the slope on the high frequency side of the midpoint (compared to the slope at the midpoint) is greater than the decrease in slope on the low frequency side of the midpoint. So, the phase slope assigned to the midpoint, and therefore kexp, is expected to be erroneously large for large d. This might seem wrong, since in the literature 32,36,37, the largest kexp was found in the experiment where d was smallest 32. This is not inconsistent with the arguments above, however, because at each location the phase can only be found up to a little above that location's BF, where the phase levels off to a plateau value. Therefore, the wavenumber for a point can only be calculated up to about the BF of the more apical of the two points of measurement and as d gets larger and larger, the wavenumber is limited to lower and lower frequencies, further from midpoint's own BF. Because k grows rapidly as BF is approached, the largest kexp is expected to be found when d is small, simply because the midpoint's own BF can be more closely approached. On a related note: the shape of the k curve is relatively flat at low frequencies, then abruptly curves up. We have seen that the abruptness is responsible for the apparent need for significant OCC mass. Increasing d softens this abruptness. Therefore, the more localized the measure of kexp is, the stronger will be the case for significant OCC mass.
Wavenumber is based on the phase-versus-frequency response; as a consequence experimental inaccuracies in the measurement of phase would be reflected in the calculation of kexp. The high frequency phase plateau imposes a frequency limit beyond which traveling wave wavenumber cannot be determined. Our interpretation of the plateau is that the traveling wave response has become small enough that the evanescent-fast wave response is dominant. We were concerned that at frequencies below the plateau, but close to it, interference between evanescent wave and traveling wave responses might cause ripples in the phase-versus-frequency curves. Evanescent wave interference in measurements of OCC motion was described by Cooper and Rhode 15. The alternating flattening and steepening of phase caused by interference could lead us to an erroneous conclusion regarding OCC mass. The thick lines in Figure 8A show the Exp#18 phase responses from runs 15 and 27 previously seen in Fig. 3. These curves are fairly smooth but do show phase ripples in the 35–45kHz region. To understand how the ripples in phase affect kexp, we smoothed them out (by eye) so the phase followed the center-line shown in the thin lines in Figure 8A. Figure 8B contrasts the k calculated using the original (solid curve) and smoothed (shaded curve) phases, and shows fitted curves from the model (thin lines). In the fitted curves the mass of the OCC was reduced from 0.022 to 0.01g/cm2 when using the smoothed data. Therefore, the contamination of traveling wave motion with evanescent-wave motion might cause us to overestimate the OCC mass. If so, this helps reconcile the apparent mass decrease as the measurements moved apically (0.022 for Fig. 6 to 0.015 in Fig. 7), as the evanescent-wave influence will diminish with distance from the region of the windows. However, even with the correction for the influence of the evanescent-wave, substantial OCC mass was indicated; the dashed curve is a massless fit and it is much less successful.
In this study we presented our experimental data from passive preparations, which was justified by the approximate insensitivity of phase to cochlear condition. However, although phase is not very sensitive to cochlear activity, there are usually small level-dependent variations caused by the active nonlinearity that might be influential in the calculation of kexp(f). Moreover, the results presented have all been from a basal turn of the cochlea. To test how robust our conclusions are—that OCC mass plays a significant role in frequency selectivity in the base, but that this significance wanes toward the apex—we applied the analysis to some in vivo measurements of turn one BM motion in active cochleae from the literature. This allowed us to evaluate the difference that healthy preparations would have on the results, as well as to probe the question of the need for significant OCC mass in regions that were 2.5–3.5mm away (BF ∼12–18kHz) from the cochlear windows 33,38.
Cooper's results from two gerbils are in Fig. 9: amplitude (A) and phase (B) from the 12kHz place at stimulus levels of 50 and 80dB SPL and from the 18kHz place at 80dB SPL. The 12kHz place phases show the generally observed 11 mild phase steepening of the moderate SPL (active) data compared to the high SPL (closer to passive) data. Closely spaced longitudinal measurements were not part of Cooper's study. To calculate kexp from Cooper's data, we used scaling-symmetry and the gerbil's place-frequency map 31 to generate the phase responses at close-by locations from a single φ(f) curve 39. The value kexp was estimated from generated responses separated by d=150μm.
The kexp(f) derived from Cooper's results are in Figure 9C. The influence of the BF position is explored first (at 80dB stimulus level). The thick lines show the curves derived from the data, the dashed thin lines give the best fit of the theoretical k(f) without OCC mass, and the solid thin lines give the best fit where mass was included. As in the results from our data above, including mass gave a much better fit to the data.
Analyzing the phase responses from the lower BF position, we compared kexp for an active (50dB) to an approximately passive (80dB) preparation. Because the low SPL φ(f) curve has a more pronounced flat/steep transition compared to the high SPL phase curve, it is not a surprise that the low SPL kexp(f) curve was similarly flatter/steeper than the high SPL curve (shaded thick and shaded dashed lines in Figure 9C). However, the general shape of the curve was unchanged and when compared to the theoretical curves, best fits were obtained when OCC mass was included and the mass was similar between the two (mocc=0.0018g/cm2 at 50dB and mocc=0.0020g/cm2 at 80dB). The small amount of change apparent in the kexp curves could be modeled via OCC resistance change (rather than mass, recall the effect of resistance in Figure 5C), which is consistent with the idea that the cochlear amplifier acts via changes in resistance, not stiffness 10,34,40.
Rhode and Recio measured chinchilla basilar membrane motion at several adjacent longitudinal locations, so their results can be used directly to calculate Δφ(f) and find kexp(f). Their phase results and derived kexp(f) are in Fig. 10. The four sets of phase results (BFs of 7, 7.9, 10.7, and 12.1kHz) were used to calculate two kexp curves, corresponding to BFs of 7.45 (using the 7 and 7.9kHz phase data) and 11.4kHz (using the 10.7 and 12.1kHz phase data). The distances d were 360μm and 450μm. The model dimensions were for gerbil and have not been modified for chinchilla, but a simple application of the analysis to these data reinforces the findings from above. The results were better fit when OCC mass was included in the theoretical expression. The mass was relatively small, and the mass and stiffness values correspond to resonant frequencies of 20 and 25kHz, more than two times the BFs. The mass used (0.003g/cm2) was twice the one used by Lim and Steele (0.0015g/cm2) to model the chinchilla BM response at BF=10kHz 7. Therefore, while mass does slow down the traveling wave and increase the wavenumber compared to the massless condition, its effect is not pronounced in these results.
The mass of the OCC that provided a good fit can be translated to height assuming that the density of the OCC is approximately that of water (ρ =1g/cm3). The values can be compared to the anatomical height from unfixed hemicochlea micrographs of Edge et al. 2, in which the gerbil BM thickness decreased from ∼55μm in the basal turn to ∼35μm in the apical turn and the OCC thickness increased from ∼125μm in the basal turn to ∼200μm in the apical turn.
At a measurement position in the basal turn (BF ∼35–40kHz), the predicted OCC height was 220μm (Fig. 6). When the phase ripples were smoothed out (Figure 8B), best fit was obtained with a smaller mass (0.01 instead of 0.022g/cm2), resulting in a smaller height (100μm). These values are much greater than the height of the BM, but consistent with the anatomical height of the OCC. This correspondence argues that the entire OCC and enclosed fluid, not just the BM, is the relevant structural element governing cochlear mechanics in the base of the cochlea.
At a more apical position (BF ∼20–25kHz), the mocc necessary was smaller than in the more basal curves of Fig. 6, which was not expected (decrease of the height from 220 to 150μm in Figure 7C). Typically in cochlear models OCC mass is either neglected or considered unchanging longitudinally. If it increases apically this helps establish a resonance-based frequency place map and the anatomy does suggest a slight increase apically. Therefore, the apical decrease in mass is hard to reconcile with a resonance-based map.
When extending the study to more data sets, similar results were obtained. In Fig. 9, at the more apical position (BF ∼12kHz), the mass value was smaller than at the more basal one (BF ∼18kHz): from 0.0075 to 0.0020g/cm2. In fact, in the analysis of Cooper's data the best fit was obtained with a higher resonant frequency in the more apical than in the more basal position. As above, this indicates that the role of local resonance in tuning diminishes apically.
Taken together, the basal and turn one results suggest that the mechanism for slowing the traveling wave might vary longitudinally, with OCC mass and the concept of local resonance playing a more prominent role in the most basal regions.
In Appendix A , we compare our volumetric stiffness values to point stiffness values from the literature, by analyzing both sets of data with a transverse beam model. The stiffness found in this article was 2–2.5 109dyne/cm3 at the more basal location (BF ∼35–40kHz) and 3–5 108dyne/cm3 at the slightly more apical location (BF ∼20–25kHz). After the beam analysis, these values overlap with the point stiffness measurements of Olson and Mountain 41 and Naidu and Mountain 42 and are roughly within an order of magnitude (usually overlap within a factor of five) of those predicted from the Emadi et al. 43 results. This article's method for determining stiffness was based on measurements of wavenumber and a 3D cochlear model, in which stiffness was treated as a free parameter. Therefore, the confirmation provided by the close match with experimental point stiffness values is reassuring.
As a very simple check, the BM displacement at frequencies well below the peak can be related to an approximate value of the driving pressure, to find a rough value of BM stiffness. For example, in Fig. 3, the velocity at 10kHz corresponds to a displacement, v/ω=50nm. The stimulus pressure within the ear canal was 80dB SPL and at frequencies well beneath the peak, the driving pressure within the cochlea can be approximated using the ∼25dB gain of the gerbil middle ear 44 as ∼5Pa. This gives a specific acoustic stiffness, P/displacement of 109dyne/cm3, in good agreement with the values above.
Scherer and Gummer 26 did not find a masslike impedance in their point measurements of OCC impedance measured through very high frequencies. However, they were compressing the OCC, not displacing it, so it is not clear what to expect in terms of mass. Previous studies by one of the current authors 13 did find evidence for significant OCC mass—in those measurements the ear was stimulated and both pressure at the OCC and the motion of the BM were measured to determine Zocc, and at frequencies above the BF, Zocc appeared to make a transition to mass-dominated. However, in the Discussion section of that article, those conclusions were questioned, since, as noted above, the cochlear traveling wave should never reach the resonant point. So that aspect of the results, which was not robust (not seen in many cases), was not considered to be reliable. The inverse method of de Boer and Nuttall 34 used BM motion measurements and a 3D model to predict OCC impedance. They did not find a resonance, but again, such a resonance is not expected to be observed as the wave will stop before reaching it. Finally, Cooper and Rhode 45, measuring in a live apical guinea pig preparation, found no change in tuning after brushing off the OCC. This is pretty conclusive evidence that the OCC mass does not play a large role in tuning in the apex.
We noted at the outset that the idea that the stiffness is not frequency dependent is likely an oversimplification, particularly in light of the frequency dependence found by Scherer and Gummer 26. How would including a stiffness that increases with frequency (as their results show) influence our conclusions? In fact, a stiffness that increases with frequency would only emphasize the need for OCC mass for the cochlear wavenumber to vary with frequency as observed. This is because the effect of OCC mass is to make the effective stiffness decrease with frequency, and if the stiffness were increasing with frequency, even more mass would be necessary to provide the necessary decrease in effective stiffness with frequency.
Some of the complexity that has been explored in 3D models bears on the unexpectedly apically decreasing mass apparent in our results. In particular, Taber and Steele 46 showed that the more limber osseous spiral lamina of the primate, compared to animals like the guinea pig, could account for the relatively large phase lags of the squirrel monkey at frequencies well below the best frequency. That sort of response is more like the relatively apical measurements we explored here, which did not have as flat a low frequency phase as the more basal results. Including this sort of detail in a cochlear model is likely required to sort out the physical properties that govern passive cochlear responses, and the role of local resonance in tuning.
If local resonance is invoked as the basis of passive cochlear tuning, simple predictions can be made about the longitudinal stiffness variation needed to produce the observed cochlear map. The resonant frequency at any location depends on the square root of the local partition stiffness divided by the local mass, similar to a simple spring-mass resonant system. The OCC mass is usually assumed to be relatively invariant longitudinally. Then, for the gerbil, as the frequency map spans over two orders of magnitude, the (volumetric) stiffness needs to range over four orders of magnitude. Naidu and Mountain 42 measured the longitudinal variation of stiffness (at a point on the BM side) in gerbil. They found that the OCC stiffness did not decrease rapidly enough to supply a resonance-based explanation for the frequency map. Based on this discrepancy, they hypothesized the existence of a more complex motion, because a significant frequency-dependent variation in effective mass gradient is possible if the organ of Corti vibrates in a complicated fashion. However, Emadi et al. 43 also measured longitudinal point stiffness variations and drew the contrary conclusion—that the measured apical decrease in stiffness, with or without a slowly varying mass increase (suggested by the anatomy), could supply the necessary stiffness gradient for a simple resonance-based cochlear map.
While our data started out supporting the idea of local resonance, the complete story has turned out to be more complicated. In the most basal measurements, the BF is just slightly less than the resonant frequency that is derived from our kexp(f) curves, supporting the idea of a resonance-based map. However, a little further apical, the apparent mass has decreased. This does not make sense in terms of a resonance-based map, since the stiffness will have to vary even more rapidly if mass is varying in the wrong direction. It has been pointed out by several authors 3,5,6 that the cochlear map can be produced without local resonance. Based on our results, local resonance is only likely to be important for setting the best frequency in the base, and has diminishing importance moving apically.
The basis for the cochlea's frequency tuning was explored by comparing theoretical predictions for the traveling wave wavenumber and direct measurements. This comparison was targeted at identifying the role that OCC mass plays in frequency tuning. This study was devised to apply in a frequency region below the resonance frequency, and not to look for the resonance directly. Based on the results of Cooper and Rhode 45, Scherer and Gummer 26, and the modeling results of Steele and colleagues 3,4,47, we rather expected to find that the OCC mass did not play a substantial role. However, the opposite was found. These results indicated that the OCC mass, by substantially decreasing the effective stiffness of the OCC, plays a leading role in passive cochlear tuning in the very base of the cochlea and a supporting role in slightly more apical positions within turn-one. Expanding our own measurements with the data and results of others reaffirmed this basic finding.
This study could be built upon: the main challenge to obtaining robust data was that kexp could not be extended to frequencies very far above BF (where evanescent-fast wave dominated the response), so its extent in frequency was limited. Future experiments that could devise a way to extend the frequency range for measuring kexp would be very useful. We used wavenumber to illuminate passive mechanics, but in addition, kexp plays a critical role in feed-forward, feed-backward models that use longitudinally coupled outer hair cell forces to add energy to the cochlear traveling wave 8,47,48. Therefore, further and more advanced measures of kexp could speak to active as well as passive mechanics.
We saw in Fig. 8 that the evanescent-fast modes may influence the calculation of OCC mass in the basal region and a caveat to these results is that the basal region of the cochlea is likely not well modeled by a rectangular box. Employing a 3D theory that is more true to the anatomy of this region would improve future efforts to match theoretical predictions to this well-explored cochlear region.
We thank Shyam Khanna for guidance and assistance with the confocal interferometer. We are grateful to Nigel Cooper for sharing his gerbil basilar membrane motion data. We also thank Nigel Cooper, Wei Dong, and Egbert de Boer for commenting on previous versions of the manuscript, and the two anonymous reviewers for their help in improving the manuscript.
This work received support from the National Institute on Deafness and Other Communication Disorders and the Emil Capita Foundation.
The model stiffness we used in the equations above was defined as S(x)=ΔP(x)/〈z〉 (constant with frequency), where ΔP(x) is the pressure across the OCC at the longitudinal location x and 〈z〉 is the average displacement over one transverse section of the organ of Corti. It is the displaced area dividing by the length of the beam,
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We wish to find S(x)=ΔP(x)/〈z〉. The pressure is taken to be uniform on the beam, so ΔP(x)=ΔP=P. The beam equation becomes simply
(with δ=beam width=probe diameter) and can be directly integrated as
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at y=0, L, leading to![]() |
.For the simply supported edges, the boundary conditions are z=0 and![]() |
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, resulting in
.The point stiffness case was treated by Gummer et al. 49. In this case the beam equation is
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The BM width is taken equal to 165μm (same value as for the model results above.) Table 1 assembles experimental point stiffness values and their corresponding model stiffness. Measurements were all recorded from the base of the gerbil cochlea. The value δ is the diameter of the probe. The model stiffness found in this article was 2–2.5 109dyne/cm3 at the more basal location (BF ∼35–40kHz) and 3–5 108dyne/cm3 at the slightly more apical location (BF ∼20–25kHz). These values overlap with those derived from the point stiffness measurements of Naidu and Mountain 42 and Olson and Mountain 41, and were in reasonable agreement—five or more times larger—with those predicted from the Emadi et al. 43 results.