| Quartz Crystal Microbalance Studies of Multilayer Glucagon Fibrillation at the Solid-Liquid Interface Biophysical Journal, Volume 93, Issue 6, 15 September 2007, Pages 2162-2169 Mads Bruun Hovgaard, Mingdong Dong, Daniel Erik Otzen and Flemming Besenbacher Abstract We have used a quartz crystal microbalance with dissipation (QCM-D) to monitor the changes in layer thickness and viscoelastic properties accompanying multilayer amyloid deposition in situ for the first time. By means of atomic force microscope imaging, an unequivocal correlation is established between the interfacial nucleation and growth of glucagon fibrils and the QCM-D response. The combination of the two techniques allows us to study the temporal evolution of the interfacial fibrillation process. We have modeled the QCM-D data using an extension to the Kelvin-Voigt viscoelastic model. Three phases were observed in the fibrillation process: 1), a rigid multilayer of glucagon monomers forms and slowly rearranges; 2), this multilayer subsequently evolves into a dramatically more viscoelastic layer, containing a polymorphic network of micrometer-long fibrils growing from multiple nucleation sites; and 3), the fibrillar formation effectively stops as a result of the depletion of bulk-phase monomers, although the process can be continued without a lag phase by subsequent addition of fresh monomers. The robustness of the QCM-D technique, consolidated by complementary atomic force microscope studies, should make it possible to combine different components thought to be involved in the plaque formation process and thus build up realistic models of amyloid plaque formation in vitro. Abstract | Full Text | PDF (647 kb) |
| Thermodynamics of Terrestrial Evolution Biophysical Journal, Volume 5, Issue 6, 1 November 1965, Pages 965-979 J.S. Kirkaldy Abstract The causal element of biological evolution and development can be understood in terms of a potential function which is generalized from the variational principles of irreversible thermodynamics. This potential function is approximated by the rate of entropy production in a configuration space which admits of macroscopic excursions by fluctuation and regression as well as microscopic ones. Analogously to Onsager's dissipation function, the potential takes the form of a saddle surface in this configuration space. The path of evolution following from an initial high dissipation state within the fixed constraint provided by the invariant energy flux from the sun tends toward the stable saddle point by a series of spontaneous regressions which lower the entropy production rate and by an alternating series of spontaneous fluctuations which introduce new internal constraints and lead to a higher entropy production rate. The potential thus rationalizes the system's observed tendency toward “chemical imperialism” (high dissipation) while simultaneously accommodating the development of “dynamic efficiency” and complication (low dissipation). Abstract | PDF (882 kb) |
| Aspiration of Human Neutrophils: Effects of Shear Thinning and Cortical Dissipation Biophysical Journal, Volume 81, Issue 6, 1 December 2001, Pages 3166-3177 Jeanie L. Drury and Micah Dembo Abstract It is generally accepted that the human neutrophil can be mechanically represented as a droplet of polymeric fluid enclosed by some sort of thin slippery viscoelastic cortex. Many questions remain however about the detailed rheology and chemistry of the interior fluid and the cortex. To address these quantitative issues, we have used a finite element method to simulate the dynamics of neutrophils during micropipet aspiration using various plausible assumptions. The results were then systematically compared with aspiration experiments conducted at eight different combinations of pipet size and pressure. Models in which the cytoplasm was represented by a simple Newtonian fluid (i.e., models without shear thinning) were grossly incapable of accounting for the effects of pressure on the general time scale of neutrophil aspiration. Likewise, models in which the cortex was purely elastic (i.e., models without surface viscosity) were unable to explain the effects of pipet size on the general aspiration rate. Such models also failed to explain the rapid acceleration of the aspiration rate during the final phase of aspiration nor could they account for the geometry of the neutrophil during various phases of aspiration. Thus, our results indicate that a minimal mechanical model of the neutrophil needs to incorporate both shear thinning and surface viscosity to remain valid over a reasonable range of conditions. At low shear rates, the surface dilatation viscosity of the neutrophil was found to be on the order of 100 poise-cm, whereas the viscosity of the interior cytoplasm was on the order of 1000 poise. Both the surface viscosity and the interior viscosity seem to decrease in a similar fashion when the shear rate exceeds ∼0.05s. Unfortunately, even models with both surface viscosity and shear thinning studied are still not sufficient to fully explain all the features of neutrophil aspiration. In particular, the very high rate of aspiration during the initial moments after ramping of pressure remains mysterious. Abstract | Full Text | PDF (287 kb) |
Copyright © 2007 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 93, Issue 11, L49-L51, 1 December 2007
doi:10.1529/biophysj.107.119222
Biophysical Letters
Ali Naji*, Alex J. Levine†,
,
and P.A. Pincus‡
* Department of Physics and Department of Chemistry & Biochemistry, University of California, Santa Barbara, California
† Department of Chemistry & Biochemistry and California Nanosystems Institute, University of California, Los Angeles, California
‡ Materials Research Laboratory, and Departments of Physics and Materials, Biomolecular Science & Engineering, University of California, Santa Barbara, California
Address reprint requests and inquiries to Alex J. Levine.The diffusivity of transmembrane proteins is a fundamental biophysical parameter controlling the dynamics of protein-protein interactions in the cell membrane. These dynamics underlie such processes as endocytosis and signal transduction 1. Understanding the size dependence of the diffusivity of membrane bound proteins is rather subtle. Saffman and Delbrück (SD) 2 originally demonstrated the significant differences between lateral diffusion in membranes and the better understood problem of diffusion in a bulk solvent. In the membrane, the diffusion constants are only weakly dependent on the size of the diffusing particle, while in bulk solvent the diffusion constant depends inversely on particle size. Although some data appear to support the Saffman-Delbrück theory 3,4,5, more recent experiments exploring the diffusivity of transmembrane proteins over a larger size range 6 using in vitro lipid bilayers show a much stronger protein-size dependence than is consistent with our current understanding of membrane hydrodynamics 2,7,8. These data suggest that the diffusivities of the proteins depend inversely on their size for a variety of proteins and protein aggregates covering about one decade of inclusion radius, and are clearly inconsistent with the SD result.
In this Letter, we address this puzzling discrepancy between theory and experiment by proposing that accounting for local membrane deformations caused by embedded proteins can resolve this conflict. We reexamine the mobility μ of a protein in the lipid bilayer. The mobility defines the linear relationship between a particle’s velocity
and the force
applied to it via the relation
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It is well known that the mobility of a rigid, spherical particle of radius a in a three-dimensional solvent having viscosity η is given by the Stokes result, μ=1/(6πηa), which has an inverse dependence on the particle radius. The mobility of the same particle when embedded in a fluid membrane, however, is more complex. There the particle moves through an effectively two-dimensional liquid that is coupled to the surrounding three-dimensional solvent by the requirement that there be no slip at the interfaces between the lipid membrane and the aqueous solvent. The hydrodynamic coupling between flows in the effectively two-dimensional fluid and the surrounding solvent introduces an inherent length scale into membrane hydrodynamics—the SD 2 length
which is set by the ratio of the two-dimensional membrane viscosity ηm to that of the surrounding bulk solvent η. In contrast, the usual low-Reynolds-number hydrodynamics in a bulk liquid is a scale-free theory.
The introduction of this extra length scale profoundly modifies the mobility of particles embedded in the membrane. Because of this, the mobility of a particle of radius a in the membrane is given by
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which suggests that, to a good approximation, all membrane bound proteins and even the constituent lipids of the membrane should have essentially the same diffusion constant.Recent experiments on the diffusion of lipid domains on giant unilamellar vesicles quantitatively support this form of the lateral mobility of embedded objects in membranes 5, but analogous experiments on membrane-bound protein mobilities do not 6. Taken together, these data suggest a resolution of this conflict. The mobilities computed above depend on only a few simple assumptions regarding mass and total momentum conservation: thus they appear unassailable. It is well known, however, that membrane bound proteins typically perturb the membrane structure locally 9,10,11,12. This local perturbation may take many forms including local changes in membrane height or thickness involving local oligomeric chain stretching, local membrane curvature, tilt of the lipids, or changes in local lipid composition relative to that the far field (for mixed lipid systems). Below we show that these membrane perturbations that must be transported along with the proteins can shift the mobility of these composite objects from the SD form to one consistent with D∼1/a scaling. This effect arises from either the enhanced dissipation associated with modifications of the flows in the bulk solvent caused by the protein-induced height or bending deformations, or the enhanced dissipation occurring within the membrane itself in cases where the protein generates local changes in composition, chain stretch, or tilt order. These two scenarios are not mutually exclusive and both give the same D∼1/a scaling, but, as they rely on somewhat different reasoning, we present the arguments independently.
If the protein has a hydrophobic mismatch with the membrane thickness, it will generate a bump on the surface having a lateral dimension on the order of the radius of the protein or the membrane thickness h10,11,12. We now estimate the effective mobility μeff of the protein and associated membrane deformation (bump) by considering the power dissipated, P=Fv, when this complex is moved at constant speed v in the membrane in response to an applied force F. Using the definition of mobility, the power input required to move the protein is
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It is also possible that the principal additional dissipative stresses are associated with degrees of freedom internal to the membrane. Such dissipation may be related to chain stretching or tilt near the protein, or to local demixing of the constituent lipid species resulting from differential affinities between the protein and the various lipid species.
We now estimate the power dissipated in the membrane. As shown in Figure 1b, we posit that the disruption of membrane structure occurs within a distance ξ of the protein. Working in the reference frame of the protein, lipids flow into this modified zone and undergo some entropy-generating (i.e., dissipative) conformational change in some boundary layer around the zone of width δξ, where the power dissipated per lipid is plipid=fv=ɛ″ v2. Since the dissipative forces f must be odd under time reversal they must be linear in the rate of lipid deformation, which is linear in velocity. Using the area density of the lipids ρ and the area of affected lipids, 2π(a+ξ)δξ, to determine the number of lipids involved in the extra power dissipation we find
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In the case of very viscous membranes where ℓ is much larger than protein radius, we cannot expect that dissipation in the less viscous bulk solvent to dominate the total dissipated power as the protein moves through the membrane. In the experiments of Gambin et al. 6, however, typically
so we expect dissipative protein-lipid interactions to account for the size dependence of the diffusivities.We have shown that one may account for the experimentally observed failure of the Saffman-Delbrück diffusivity of membrane bound proteins by positing that the protein carries with it a locally deformed patch of membrane. This local deformation will generate extra flows in the bulk solvent if the protein creates a bump or depression in the membrane; if the protein modifies the internal structure of the lipids in its immediate vicinity, then there is enhanced dissipation in the membrane as the deformation is dragged by the protein. As long as the power dissipated in the membrane or in the surrounding solvent arising from this membrane deformation is at least comparable to the dissipation in the usual flows of the unperturbed membrane, one will observe an inverse radius dependence of the protein diffusivity.
Recent simulations of inclusion mobility 14 have also found deviations from the SD mobility of inclusions. There it was found that μ∼1/a2 because of the dissipation enhancement coming from internal soft modes of the inclusion. That work shows yet another way in which extra internal degrees of freedom shift the mobility of the object. These inclusions did not deform the membrane in ways that we suggest here; new simulations having these effects are clearly desirable. Experiments on lipid domain mobilities find agreement with the Saffman-Delbrück expression 5. There one should not expect large perturbations of the surrounding membrane by these domains. Transmembrane proteins, on the other hand, are known to generate static deformations of the surrounding membrane. Little work has been done on examining the dynamic effects of such membrane perturbations. Our simple heuristic analysis suggests that both further theoretical work and more local examinations of protein dynamics in membrane are required to better understand protein transport properties in lipid bilayers.
This study was partially carried out at the Aspen Center for Physics and we express our appreciation for their hospitality. We also acknowledge important discussions with N. Taulier, F. Brown, W. Urbach, R. Netz, and J. Hardin.
P.A.P. acknowledges support from National Science Foundation grants No. DMR-0503347 and No. DMR-0710521.
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