BIOPHYSICAL LETTERS:

Pallavi Sharma, Dakshinamurthy Rajalingam, Thallapuranam Krishnaswamy Suresh Kumar, and Surendra Singh

A Light Scattering Study of the Interaction of Fibroblast Growth Factor (FGF) with its Receptor
Biophys. J. 2008 94: L71-L73; Published ahead of print on February 29, 2008 as doi:10.1529/biophysj.108.129569. [Abstract] [Full Text] [PDF] [Supplement]  

BIOPHYSICAL THEORY AND MODELING:

Paolo Bisegna, Giovanni Caruso, Daniele Andreucci, Lixin Shen, Vsevolod V. Gurevich, Heidi E. Hamm, and Emmanuele DiBenedetto

Diffusion of the Second Messengers in the Cytoplasm Acts as a Variability Suppressor of the Single Photon Response in Vertebrate Phototransduction
Biophys. J. 2008 94: 3363-3383. [Abstract] [Full Text] [PDF]  

Tomás Gedeon, Konstantin Mischaikow, Kathryn Patterson, and Eliane Traldi

Binding Cooperativity in Phage is Not Sufficient to Produce an Effective Switch
Biophys. J. 2008 94: 3384-3392. [Abstract] [Full Text] [PDF]  

Justin L. MacCallum, W. F. Drew Bennett, and D. Peter Tieleman

Distribution of Amino Acids in a Lipid Bilayer from Computer Simulations
Biophys. J. 2008 94: 3393-3404; Published ahead of print on January 22, 2008 as doi:10.1529/biophysj.107.112805. [Abstract] [Full Text] [PDF] [Supplement]  

Andrej Vilfan

Myosin V Passing over Arp2/3 Junctions: Branching Ratio Calculated from the Elastic Lever Arm Model
Biophys. J. 2008 94: 3405-3412; Published ahead of print on January 25, 2008 as doi:10.1529/biophysj.107.120568. [Abstract] [Full Text] [PDF]  

Marco J. Morelli, Sorin Tanase-Nicola, Rosalind J. Allen, and Pieter Rein ten Wolde

Reaction Coordinates for the Flipping of Genetic Switches
Biophys. J. 2008 94: 3413-3423; Published ahead of print on January 25, 2008 as doi:10.1529/biophysj.107.116699. [Abstract] [Full Text] [PDF]  

Eran Eyal and Ivet Bahar

Toward a Molecular Understanding of the Anisotropic Response of Proteins to External Forces: Insights from Elastic Network Models
Biophys. J. 2008 94: 3424-3435; Published ahead of print on January 25, 2008 as doi:10.1529/biophysj.107.120733. [Abstract] [Full Text] [PDF]  

Marie-Pierre Durrieu, Richard Lavery, and Marc Baaden

Interactions between Neuronal Fusion Proteins Explored by Molecular Dynamics
Biophys. J. 2008 94: 3436-3446; Published ahead of print on January 22, 2008 as doi:10.1529/biophysj.107.123117. [Abstract] [Full Text] [PDF] [Supplement]  

Omer Dushek and Daniel Coombs

Analysis of Serial Engagement and Peptide-MHC Transport in T Cell Receptor Microclusters
Biophys. J. 2008 94: 3447-3460; Published ahead of print on January 28, 2008 as doi:10.1529/biophysj.107.116897. [Abstract] [Full Text] [PDF]  

Osman N. Yogurtcu, S. Bora Erdemli, Ruth Nussinov, Metin Turkay, and Ozlem Keskin

Restricted Mobility of Conserved Residues in Protein-Protein Interfaces in Molecular Simulations
Biophys. J. 2008 94: 3475-3485; Published ahead of print on January 28, 2008 as doi:10.1529/biophysj.107.114835. [Abstract] [Full Text] [PDF] [Supplement]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Dezso Boda, Wolfgang Nonner, Douglas Henderson, Bob Eisenberg, and Dirk Gillespie

Volume Exclusion in Calcium Selective Channels
Biophys. J. 2008 94: 3486-3496; Published ahead of print on January 16, 2008 as doi:10.1529/biophysj.107.122796. [Abstract] [Full Text] [PDF]  

Jonggu Jeon and Gregory A. Voth

Gating of the Mechanosensitive Channel Protein MscL: The Interplay of Membrane and Protein
Biophys. J. 2008 94: 3497-3511; Published ahead of print on January 22, 2008 as doi:10.1529/biophysj.107.109850. [Abstract] [Full Text] [PDF] [Supplement]  

MEMBRANES:

Shuo Qian, Wangchen Wang, Lin Yang, and Huey W. Huang

Structure of the Alamethicin Pore Reconstructed by X-Ray Diffraction Analysis
Biophys. J. 2008 94: 3512-3522; Published ahead of print on January 16, 2008 as doi:10.1529/biophysj.107.126474. [Abstract] [Full Text] [PDF]  

Yann Gohon, Tassadite Dahmane, Rob W. H. Ruigrok, Peter Schuck, Delphine Charvolin, Fabrice Rappaport, Peter Timmins, Donald M. Engelman, Christophe Tribet, Jean-Luc Popot, and Christine Ebel

Bacteriorhodopsin/Amphipol Complexes: Structural and Functional Properties
Biophys. J. 2008 94: 3523-3537; Published ahead of print on January 11, 2008 as doi:10.1529/biophysj.107.121848. [Abstract] [Full Text] [PDF] [Supplement]  

Roland Krivanek, Linus Okoro, and Roland Winter

Effect of Cholesterol and Ergosterol on the Compressibility and Volume Fluctuations of Phospholipid-Sterol Bilayers in the Critical Point Region: A Molecular Acoustic and Calorimetric Study
Biophys. J. 2008 94: 3538-3548; Published ahead of print on January 16, 2008 as doi:10.1529/biophysj.107.122549. [Abstract] [Full Text] [PDF]  

Yi Y. Zuo, Eleonora Keating, Lin Zhao, Seyed M. Tadayyon, Ruud A. W. Veldhuizen, Nils O. Petersen, and Fred Possmayer

Atomic Force Microscopy Studies of Functional and Dysfunctional Pulmonary Surfactant Films. I. Micro- and Nanostructures of Functional Pulmonary Surfactant Films and the Effect of SP-A
Biophys. J. 2008 94: 3549-3564; Published ahead of print on January 22, 2008 as doi:10.1529/biophysj.107.122648. [Abstract] [Full Text] [PDF]  

Sun-Joo Lee, Yuhua Song, and Nathan A. Baker

Molecular Dynamics Simulations of Asymmetric NaCl and KCl Solutions Separated by Phosphatidylcholine Bilayers: Potential Drops and Structural Changes Induced by Strong Na⁺-Lipid Interactions and Finite Size Effects
Biophys. J. 2008 94: 3565-3576; Published ahead of print on January 25, 2008 as doi:10.1529/biophysj.107.116335. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Chee Chew Lim, Haijun Yang, Mingfeng Yang, Chien-Kao Wang, Jianru Shi, Eric A. Berg, David R. Pimentel, Judith K. Gwathmey, Roger J. Hajjar, Michiel Helmes, Catherine E. Costello, Shuanghong Huo, and Ronglih Liao

A Novel Mutant Cardiac Troponin C Disrupts Molecular Motions Critical for Calcium Binding Affinity and Cardiomyocyte Contractility
Biophys. J. 2008 94: 3577-3589; Published ahead of print on January 22, 2008 as doi:10.1529/biophysj.107.112896. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Yu Kay Law, Javad Azadi, Carlos E. Crespo-Hernández, Eric Olmon, and Bern Kohler

Predicting Thymine Dimerization Yields from Molecular Dynamics Simulations
Biophys. J. 2008 94: 3590-3600; Published ahead of print on January 11, 2008 as doi:10.1529/biophysj.107.118612. [Abstract] [Full Text] [PDF] [Supplement]  

PHOTOBIOPHYSICS:

Chavdar Slavov, Matteo Ballottari, Tomas Morosinotto, Roberto Bassi, and Alfred R. Holzwarth

Trap-Limited Charge Separation Kinetics in Higher Plant Photosystem I Complexes
Biophys. J. 2008 94: 3601-3612; Published ahead of print on January 25, 2008 as doi:10.1529/biophysj.107.117101. [Abstract] [Full Text] [PDF] [Supplement]  

Darius Abramavicius, Dmitri V. Voronine, and Shaul Mukamel

Unravelling Coherent Dynamics and Energy Dissipation in Photosynthetic Complexes by 2D Spectroscopy
Biophys. J. 2008 94: 3613-3619; Published ahead of print on January 11, 2008 as doi:10.1529/biophysj.107.123455. [Abstract] [Full Text] [PDF]  

Yasushi Imamoto, Sanae Tatsumi, Miki Harigai, Yoichi Yamazaki, Hironari Kamikubo, and Mikio Kataoka

Diverse Roles of Glycine Residues Conserved in Photoactive Yellow Proteins
Biophys. J. 2008 94: 3620-3628; Published ahead of print on January 28, 2008 as doi:10.1529/biophysj.107.123414. [Abstract] [Full Text] [PDF]  

PROTEINS:

Zenghui Liu, Weijun Weng, Robert M. Bookchin, Virgilio L. Lew, and Frank A. Ferrone

Free Energy of Sickle Hemoglobin Polymerization: A Scaled-Particle Treatment for Use with Dextran as a Crowding Agent
Biophys. J. 2008 94: 3629-3634; Published ahead of print on January 22, 2008 as doi:10.1529/biophysj.107.117465. [Abstract] [Full Text] [PDF]  

Stefania Rigacci, Monica Bucciantini, Annalisa Relini, Alessandra Pesce, Alessandra Gliozzi, Andrea Berti, and Massimo Stefani

The (1–63) Region of the p53 Transactivation Domain Aggregates In Vitro into Cytotoxic Amyloid Assemblies
Biophys. J. 2008 94: 3635-3646; Published ahead of print on January 16, 2008 as doi:10.1529/biophysj.107.122283. [Abstract] [Full Text] [PDF]  

M. Gabriella Santonicola, Abraham M. Lenhoff, and Eric W. Kaler

Binding of Alkyl Polyglucoside Surfactants to Bacteriorhodopsin and its Relation to Protein Stability
Biophys. J. 2008 94: 3647-3658; Published ahead of print on January 30, 2008 as doi:10.1529/biophysj.107.113258. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Natàlia Dave, Víctor A. Lórenz-Fonfría, Gérard Leblanc, and Esteve Padrós

FTIR Spectroscopy of Secondary-Structure Reorientation of Melibiose Permease Modulated by Substrate Binding
Biophys. J. 2008 94: 3659-3670; Published ahead of print on November 16, 2007 as doi:10.1529/biophysj.107.115550. [Abstract] [Full Text] [PDF] [Supplement]  

CELL BIOPHYSICS:

Javier Satulovsky, Roger Lui, and Yu-li Wang

Exploring the Control Circuit of Cell Migration by Mathematical Modeling
Biophys. J. 2008 94: 3671-3683; Published ahead of print on January 16, 2008 as doi:10.1529/biophysj.107.117002. [Abstract] [Full Text] [PDF] [Supplement]  

Yoichiro Mori, Alexandra Jilkine, and Leah Edelstein-Keshet

Wave-Pinning and Cell Polarity from a Bistable Reaction-Diffusion System
Biophys. J. 2008 94: 3684-3697; Published ahead of print on January 22, 2008 as doi:10.1529/biophysj.107.120824. [Abstract] [Full Text] [PDF] [Supplement]  

BIOENERGETICS:

Marcel G. Friedrich, Joseph W. F. Robertson, Dieter Walz, Wolfgang Knoll, and Renate L. C. Naumann

Electronic Wiring of a Multi-Redox Site Membrane Protein in a Biomimetic Surface Architecture
Biophys. J. 2008 94: 3698-3705; Published ahead of print on January 25, 2008 as doi:10.1529/biophysj.107.117846. [Abstract] [Full Text] [PDF] [Supplement]  

ELECTROPHYSIOLOGY:

Jian Shi, Hui Qiong He, Rong Zhao, Yan-Hong Duan, Jin Chen, Ying Chen, Juan Yang, Jian Wei Zhang, Xue Qin Shu, Ping Zheng, and Yong Hua Ji

Inhibition of Martentoxin on Neuronal BK Channel Subtype (+β4): Implications for a Novel Interaction Model
Biophys. J. 2008 94: 3706-3713; Published ahead of print on January 16, 2008 as doi:10.1529/biophysj.107.122150. [Abstract] [Full Text] [PDF]  

OTHER:

Vadim N. Biktashev, Ara Arutunyan, and Narine A. Sarvazyan

Generation and Escape of Local Waves from the Boundary of Uncoupled Cardiac Tissue
Biophys. J. 2008 94: 3726-3738; Published ahead of print on January 22, 2008 as doi:10.1529/biophysj.107.117630. [Abstract] [Full Text] [PDF] [Supplement]  

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